Mercenaria mercenaria (northern quahog): 123558235
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Entry
123558235 CDS
T07835
Name
(RefSeq) uncharacterized protein LOC123558235
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123558235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmer03021
]
123558235
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123558235
Transcription machinery [BR:
mmer03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123558235
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
123558235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_C
zf_PCFS4
Pcf11_helical
Motif
Other DBs
NCBI-GeneID:
123558235
NCBI-ProteinID:
XP_053398989
LinkDB
All DBs
Position
5:27386634..27425490
Genome browser
AA seq
2572 aa
AA seq
DB search
MALSEEVVDEYKTSLADLNFNSKPLINMLTMLAEDHEQHAPEIVKVIEDHINKCKREKKL
PALYLMDSIMKNLEKTSYKSLFSKNIVQTFTSVFEQVDEKTRASMFKLRQTWSTMLPNAT
LYRVDKKINSLLDPAWPITATEPEQTSIHVNPRFLQGKGSESEHSSPEVVEEPVEDSEDQ
ETIMRRELIAKQQELLSLKQARLELELAEAAEKLRKKQGGKPSVASSTATPLGLPLPSLE
DTLPLPEVAAKPRDPRPRPTDPRRRDPRLQNQVVSSPPSVPSTGTGPESVVASLPGQSAF
QSMVPSSSQSLFPPVQPQGPYAVSQVPAAGMVPYNGLQAPGMPYQPMIGVPPNIPAHFSG
EVFAQEECAKFSDDNDSDSSSISGLQGPNNTHFSKQSNVRDPRTRVEHRRTEEHRRTDSG
SRVEHRNYQGRHRNSDKPVHRHTSDKPTAAVKDTHKDRDPRISSGREAHDKRKSKDREAP
VPIKQSRETASRSSLKSDQQGTKHRSLSKERESKSDTKLKDSFEADRKRKEEEKKKIDVK
SNRKGEERRSEKSKERTSREREKSPQKSPKQYSSKSRDIVGDKRGERKSEERKDTKTESK
KSEAATNNKKGNSKSDIKKRDKNKSPDMKQSIKKSNYVESMDIDERKKPGKEAEKRCSSD
GQDHERLIKKPKLEKPFTETSSALNEITSDIDNKTGDTEIMKDVDLKQEDMDVDTPEQDV
PKIDDDISDLFGGEDEDYRPTVQKQQQQLPLKSPSSKGWDQFKARQPDQYAYDIALKKQR
EDSLVENEPVGLDEEPQDEDLRVHQPEFQRQMSAVDTMEIPEELSSNQHTKILLRAHRQL
KEGLITHEQHQELLKQLGQLMQIQQLQEIQEQNRRLSGELLQPKEEVPNSDLRSIASPSR
QPEQEVLARETVREVRSPDRPLDTFKIPKKSRERAEEDDRRKELSNLYPESPQEDRYRAH
GPFSGRESLNRVEDQGHPPRENVGVKEPLKDEPWRGQDGRRPPRDDFVRQGPPPFRGQET
QLNIEDRFDGPSEHIGPGNIEFNRRGPPDDRRGPPDDRRGLPDGTKGPPDDRREPPADRR
GLPDDRRGPPDDRRGPPDERRGPPDDIRGPPDDRMGPPEDRRGPPDDRRGPPEDRRGPPD
IRRGPPEDRRGPPDGRRGPLDDRRGPPDDRRVPPDDRRGPPDDRRGPPESRRGPHREDFP
ENRRLRPDGPLDDFDGRRQMELDLDRRGPLDRFEDAPNVREPRGPYRGNDDRRPNNWKEG
QWPDRRGADGPPDQRGQRYRGPGRDFDRRGRDEKPEFFGGPPDSMGFPDEVNRSPGDPEW
RDIRNPEMWRDGEIENGEFDKRGPQGRFREGRNFDRRGPNGPKDIPPEKRGHIEHPVGRG
RPGLPQDRRGPREDKRGGPQGDRRHGNDEDKSIDMSPSNLKEGPQSWDDLRGDDMRGPPS
HRGPPHLEGPFGRPGPPAEGSGPWFPHGRRGDSPKKEPWRGPPDKKHSNERQRPRDGPPR
HGHKDDRQDEEFKPFPEQPKAKPLMSLLDPLPPRPPPGLRKTMGDPRMQGFGPRGPPRFD
GPRPEGPQDMVRPGGPFQPPSDTYIDKFGDPRFRCFVDMGPIVSEEVIIGKRNFEIKLGA
PPRKIPWGKDFIEVFADPSKRGIVIDNSLMYKFGERVKDVTIRGRKEKLFYHGRPLSMWI
DGQHYEVRVDAPPKSMSINGKIHKIQIDGRDMMILIDKEEKGRFGGEPRFVFIDEERMEI
RFDPPPRHILIDGNLCELKLNMQQPCVNIKGIYHGIRFDGPPRDVFINGKLYQIFTDHAV
KLRVGNRYHYVALGGPCHEIIVDGKWFEMKFSEAPKEVNVGNQVLFVQLPGSPPEVKILP
EIAQEPRPIPPGMQGPMRPGIPMPGPGPIGFAGPRGPNMVPGGPQGPGMPMPGVGPQGLP
GPMQPPAGLLQQPQMNVPQSTAPAMSLPGAPVIPGIGQPVVGTQATQSSVPNVLSSLFPP
VPQTSSAPAPIDINNLFAKLINTGIIKKEEEKQPEPPTQAPKPELVKPPEYILPQKKKPE
EKFEDVPDMTEMDTNEMKSLPVGMIQRLYSGIQCTSCGERFMLKDGEKTEKYRQHLDWHF
RQNRRGKTDMKLSSCRKWYYGIDDWIQYEEIVDSEESGKSNFFEQQQQPVDTTPTNTQNP
LTLIVPEGVSAVRCPAATGNDTEDMCNICSEVFEQYWDEDLEEWHLRDAIKVNNKTYHPI
CYEDHTDVSEGTPSPSVLNVVEPTYMSRKSLTYDESSQDGHHASFEEERKISTICSEPMD
TAVNETATPDVGVKTEPEENSVVPVTVKQEPELDNKLDIKQEPDLIKELEVKIEPGLEDM
SHDQTDSGGQSDNTVPHTDIKTEPLEDHENLPDCQEDNPSVEIQSEIFDNPAKPSVEIQS
ESEIVDRIAEQETVTKQTEVSDKLEETAMETKDSDIPDSAEMEETETDNISDSEEPDPET
QETVAETDSNTEQKEESMEADSEPEIKSDCEPKTNIEIATSGIHENTSASMSLPIEPAGC
ETERSPTYSKLSKIKLVIPQETQDITPEVLEIGSNASTPTQDELPSPLGEES
NT seq
7719 nt
NT seq
+upstream
nt +downstream
nt
atggctctatcggaggaagttgtggacgaatacaaaacgtccttggcggatctgaatttc
aacagcaagccgttgatcaatatgttgacgatgctggcagaagaccatgaacagcatgcg
ccggagattgttaaagttattgaagatcacatcaacaagtgtaaacgagagaaaaagctg
cctgcgttgtatttaatggactcaataatgaagaatttagagaaaaccagttacaaatca
ctgttctcaaagaacatcgttcagacatttacctcagtatttgagcaggttgatgaaaaa
acaagagcatcaatgtttaaattaaggcagacgtggagcactatgttaccaaatgcaacc
ctgtatcgagtagataaaaaaatcaacagcctcttggatccagcttggccaatcactgca
acagaaccagaacagaccagtatacatgtgaatcccagatttttacaagggaagggcagt
gagagcgagcattcatcaccagaagttgttgaggagcctgtcgaggactccgaggatcag
gagacgataatgagacgggaactaatagctaaacaacaagagttactgagtctaaaacaa
gcaaggcttgaactagaactggcagaggcagcagaaaaacttaggaagaaacagggtgga
aaacccagtgttgcttcatccactgctacaccactaggtttacctttgccaagtttggaa
gatacattgccattgccagaggttgcagcaaagcccagggatcccagacctcgacctaca
gatcctcgtaggagagatccaaggcttcagaaccaagttgtatcatctccaccgtcagtt
ccatctactgggactggaccagaatctgttgtcgcttcattaccgggacaaagtgcattt
cagagcatggtacccagttctagtcaatcattattccctccagtacagcctcaagggcct
tatgcagtaagccaggtaccagcagcaggtatggtgccatataatggtctccaggctcct
ggtatgccataccagcccatgattggtgtgcctccaaacatcccagcacatttcagtggg
gaagtttttgctcaagaagaatgtgccaaatttagtgatgataatgattctgattctagt
agtatttctggcttacagggtcctaacaatactcacttttctaaacagtcaaatgtacgt
gatccaaggactcgtgttgaacatagaagaactgaagaacataggagaactgacagtggt
tcaagggttgaacataggaattaccagggtaggcacagaaatagtgataaaccagtgcat
agacatactagtgataaaccgacagctgctgtgaaagacacacacaaagatagagaccct
agaattagttctggtagggaagcacatgacaaaagaaaatcaaaagatcgagaagcacct
gttcctattaaacagtctcgagaaacggcatctcggtcttctcttaaaagtgatcaacag
gggactaagcacagaagtctttcaaaggaaagagaaagtaaatctgacacaaaactgaaa
gattcatttgaagcagataggaaaaggaaagaagaggaaaaaaagaaaattgatgtgaaa
agtaatagaaaaggtgaagagagaaggtcagaaaaatcaaaagaacgaaccagtcgagaa
agagaaaaatcgccccagaaatcaccgaaacaatattcctctaaaagcagagacattgtt
ggagataaaagaggcgaacggaaatctgaagaaaggaaagatactaaaacagaatctaaa
aaatcagaagcagctacaaataacaagaaaggtaatagtaaatcggacattaaaaagagg
gacaaaaataagtctcctgatatgaaacaaagtataaaaaaatcaaattatgtagagtcg
atggatattgatgagagaaaaaagcctggaaaggaagctgaaaaaagatgtagcagtgat
ggacaagatcatgaaagattgataaaaaaacctaaactagaaaaaccattcactgagact
agcagtgctttgaatgagattacaagtgacattgataataaaacaggtgatacagagata
atgaaagatgttgatttgaaacaagaagatatggatgttgacactcctgaacaggatgtt
ccgaagattgatgacgacatcagtgatttatttggtggagaggatgaagattatcgtccc
accgtccagaaacaacaacaacaacttcccctcaaatccccgagtagtaaaggctgggat
cagttcaaggcaagacaaccagatcaatatgcatatgatatagcactgaaaaagcagaga
gaagattctttggtggagaatgaaccagttgggctagatgaggagccacaggatgaagat
ttacgagtacatcagcctgagtttcagaggcagatgtctgctgttgataccatggaaata
ccagaggaactctctagcaatcagcacactaaaattctcctcagggcacatagacagcta
aaggaaggtcttattacacatgagcaacaccaggaactattaaagcagttaggtcagttg
atgcagatacaacaacttcaagaaattcaggagcagaatcgccgactgtctggtgaacta
cttcaacccaaggaggaagtgccaaatagtgacctcagaagtatagcatctccatcgaga
cagcctgaacaggaagtgcttgcaagggaaacggtacgtgaagttagatcaccagacagg
cctctggatacctttaaaattccaaagaagagtagggaaagggctgaagaagatgacaga
aggaaggaattgagtaatttgtacccagagtcaccacaggaagaccgttacagagcacac
ggtcccttcagtggaagagaaagcctgaacagggttgaggaccaaggacatcctccaaga
gaaaatgttggtgtaaaagagcctcttaaagatgaaccctggagaggtcaagatggcagg
agaccaccaagggatgattttgttagacaagggcctccgccattcagaggacaagaaaca
cagttaaacattgaagacaggtttgatggaccatctgaacacataggcccaggaaacatt
gagttcaatagaagaggtcccccagatgacagaagaggtcccccagatgatagaagaggg
cttccagatggtacaaaaggtcccccagatgatagaagagaacctccagctgatagaaga
gggctgccagatgacagaagaggtccaccagatgatagaagaggacctccagatgagaga
agagggcctccagatgacataagaggtcccccagatgatagaatggggcctccggaggac
agaagaggtcccccagatgatagaagagggcctccagaggacagaagaggtcccccagat
attagaagagggcctccggaggacagaagaggtcccccagatggtagaagagggcctctg
gatgacagaagaggtcctccagatgacagaagagttcccccagatgatagaagagggcct
ccagatgacagaagaggtcccccagagagcagaagaggtcctcatagagaagattttcct
gaaaatagaaggttgagaccagatggtccacttgatgactttgatggcagaagacaaatg
gaactggatttggataggagaggtccacttgatagatttgaagatgcaccaaatgtaaga
gagccaagaggtccctatagaggtaatgatgataggagacccaacaactggaaagaggga
caatggccagatagacgaggtgctgatggtccaccagatcagagaggacaaaggtatagg
ggacctggaagagactttgatagaagaggcagagatgaaaagcctgaattttttggtggt
ccacctgatagcatgggatttccagatgaggtaaatagaagtcctggtgatccagagtgg
agggatataaggaatcctgaaatgtggagagatggtgaaatagaaaacggtgagtttgat
aaaaggggtcctcaaggaagatttagagagggcagaaattttgatcgtagagggccaaat
ggaccaaaagacattccaccagaaaagagaggtcatatagagcacccagtagggagagga
agacctggtcttccacaagatagaagaggcccacgtgaggacaagagaggcggcccacaa
ggggacagaagacatggtaatgacgaagacaaaagcatagatatgtcacctagtaacttg
aaagagggaccccagtcctgggatgacttgagaggcgatgatatgagaggacctccaagt
cacagaggacctcctcatttggaaggaccatttggacgcccaggtcctcctgctgaggga
tcaggaccttggtttcctcacgggcgcagaggggacagtccaaagaaagaaccatggagg
ggacctccagataaaaagcattcaaatgaaagacaacggcctcgcgatggtccgcctaga
catggtcataaagatgacaggcaagatgaagaattcaaacctttcccagaacaacctaaa
gcaaagcctctgatgtctttacttgatcctttacctcccagaccaccacctggtctaagg
aagactatgggtgatcctcgtatgcaagggtttgggcctaggggccctccaagatttgat
ggtccaaggccagagggcccgcaagatatggtaaggccaggtggtccatttcaaccacca
tctgacacttacattgacaagtttggagacccaaggtttagatgttttgttgatatggga
cctatagtaagtgaagaagtcattattggaaagagaaattttgaaataaaactaggtgca
cctcccagaaagataccctggggtaaagatttcattgaagtttttgctgatccatctaaa
agaggaattgtgatagataatagtctgatgtacaagtttggagagagggtgaaagatgtg
actattcgaggaaggaaggagaaattgttttatcatggccgtccattaagtatgtggata
gatggtcagcattatgaagtgagagtagatgctcctccaaaatctatgagtatcaacggt
aaaattcacaagatacaaattgatggcagggatatgatgattttgattgataaggaagag
aagggaagatttggcggagagccgagattcgtgttcatagatgaagaacgtatggaaatc
aggtttgatcctccaccaagacatatactcattgatggcaacctatgtgagctcaagctt
aacatgcagcaaccttgtgtaaatatcaaaggaatttatcatggcattagatttgatggt
ccaccaagagatgtattcatcaatgggaagttgtatcagatctttactgaccatgctgtc
aaacttagagttggtaatagatatcattatgtagctcttggtggtccttgtcatgaaata
attgtagatggcaaatggtttgaaatgaaattcagtgaagctccaaaagaagttaatgtt
ggcaaccaggtattgtttgttcagttaccaggtagtccaccagaggtaaagatattacca
gaaattgctcaagaaccaaggcctattcctccaggtatgcaaggcccaatgcgaccagga
atacccatgcctgggccaggacctattgggtttgctggaccaagaggacctaacatggtt
cctggaggcccacagggaccgggaatgcccatgcctggtgtgggaccgcaaggtttgcca
ggacctatgcagcccccagcaggacttttacagcagccacaaatgaatgtacctcagagt
actgcacctgccatgtctttgcctggagcacctgttatacctggtattggacaaccagta
gtaggtacccaggcaacacagtcaagtgtgccaaatgtgttatcaagtttgttcccccct
gtaccacagacaagcagtgctcctgcaccaattgatataaacaacctgtttgccaaactg
atcaatactggtatcatcaagaaggaagaagaaaaacagccggaaccaccaacacaggca
cctaaaccagagctcgtcaaacctccagaatatattctaccgcagaaaaagaaacctgag
gagaaatttgaagatgttccagacatgactgagatggatacaaatgaaatgaagagcttg
ccagttggaatgattcagcgtttgtactctggtattcagtgtacatcttgtggggaaagg
tttatgctcaaagatggtgagaagacagagaaatatcggcaacatcttgactggcatttc
cggcagaaccgcagaggaaagacagatatgaagttgagcagttgtaggaagtggtattat
ggaattgatgactggatacagtatgaagaaatagtggattcagaggagtctggtaaaagc
aacttctttgagcaacaacaacagcctgtggatactaccccaactaatactcagaaccct
cttactttgattgtacctgagggtgtctcagccgtcaggtgtcccgctgctacaggaaat
gatactgaagatatgtgcaatatatgttctgaggtgtttgagcaatattgggatgaggat
ctggaggagtggcatctcagggatgccataaaagtcaacaacaaaacataccatcccatt
tgttatgaggatcatactgatgtgtctgaaggcacacccagtccatcagtcttgaacgtt
gtagagccaacctacatgtcgaggaagtcactcacttatgatgaatcttcacaggacggt
catcatgcttcatttgaggaagagaggaaaatttcaacaatttgttctgaacctatggac
actgcagttaatgaaactgcaacaccagatgttggtgtaaaaacggaaccagaagaaaat
tctgtggttcctgttacagtaaaacaggaaccagaacttgataataaacttgatattaaa
caggaaccagatctcataaaggagctggaagtgaagatagaaccaggattggaggatatg
tcacatgatcaaacagatagtggtggacagtcagataatactgttccacatactgatatt
aaaacagaaccattagaggatcatgagaatttacctgactgtcaggaagataatcctagt
gttgaaatacagagtgaaatttttgataatcctgctaaacctagtgttgaaatacaaagt
gaaagtgaaattgttgatagaattgctgaacaagaaactgttacaaaacaaactgaagtt
tcagataagttagaagaaacggcaatggaaactaaggattctgatattcctgactctgct
gagatggaagaaactgaaacagacaatatctcagacagtgaagaacctgatcctgaaact
caggaaacagttgcagaaactgattctaatactgagcaaaaggaggaaagcatggaagct
gattccgagccagaaattaaatcagactgtgagcctaagacaaatattgaaatagctacc
tcaggtatacatgaaaacactagtgcaagtatgtctctacctattgaaccagctggttgt
gagactgaacgttcaccaacatactctaaactgagtaaaataaaacttgtcattcctcag
gaaacccaggatatcactcctgaagtattagagattggatctaatgcaagcacgcctaca
caggatgaactacctagtccactaggagaggaatcctga
DBGET
integrated database retrieval system
