Mercenaria mercenaria (northern quahog): 123558240
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Entry
123558240 CDS
T07835
Name
(RefSeq) LIM and calponin homology domains-containing protein 1-like isoform X1
KO
K06084
F-box protein 20
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mmer04121
]
123558240
Ubiquitin system [BR:
mmer04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
123558240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CH
PDZ
LIM
PDZ_6
CAMSAP_CH
PDZ_2
Motif
Other DBs
NCBI-GeneID:
123558240
NCBI-ProteinID:
XP_053398990
LinkDB
All DBs
Position
5:complement(27924545..28105719)
Genome browser
AA seq
1734 aa
AA seq
DB search
MAEDTQENEEEWIPIRLREDEEMDFFTELALHEAERWIQAVTRKKFEYAEDFRKSLGNGV
LLCELLNCLKPGSVKRINKLPGAIAGLDNINVFLTACEKNFGLNKTQLFDPTDLEDLSNR
AISDESSNGGNEFFLKQEVDRRAINVAVTVYWLGRTVAGKYKGPELDASAFGALVHSHGN
KNIISEDSFKNGSPLTKDNHKHIRDSSYDSLGSYERESESSFDELDSSGTMPVRSDMREM
RRYGSASSLSMPRDLRLSTASGESMYSDDKHDGMYVSSPDLSQGSHAHTRSSSTDSMEGN
YYGNHSRQSSGSTDNYATRRSGSSSSARKTSTSAPDPLQFVKLKGAADLAAQAKKQMEVA
KEVNMMRGKVDSVGSNEEPDWQSNFNNWKSRRKSTHARLESDTLDEEEEKRPQKTFSQIM
AEKEKRRSVGPMSLYPTEDEDIKMEKKDKRRSLGAMNFYPLEDDDSGIGVKTRESHISKT
NSQKQESKPKNKSKADVAPWAHDSSGEDNSQSDSETNNSHQSGDTDSVFSDKSTPSKVLS
DDDSWVKNKQSAQTVSSKLTPPVRTQRSLGDSMKIWENSANESQKKDDKKVKDLPANSAK
IRNITQAFEQKDKEANATPVVTKRSEFSRSSLSKSLDLTDSYSKPYSPLEKKPPSPLSPT
APKALTPRDQRFSQNFSPVGSPATNSADKKFTEKTIKINQKPNNDKGFGFFLVGGCEKRQ
PVTVQRVSLGSAADVCEVEANDELLSVNGRDVTSLTLAQVQGMVDHSVKRGQIELRIKRY
IQEEGYDSMEESAFTDKASINNNNKTDHLNETSHYKPALQMSTRTEEKPRLMDQLIGEQQ
REANNNERNKRAPSPVAAESFTADVRILAQSAPAQQSTPAQQTTPVKQTPSPTQDMSAPQ
DVTLTEERSTISVRKSPASTTPKPDEPPVQMQYSRTPVKQDSPPPPTPPKTELPPLAKYT
ESPGVTTSDDSSGFGPPAALLRWQRPRAKSEYQNPFSMSAAENQPSDRTKRLSATLPFKS
DNTFSLDKDYSKDDSMMDKVSRDFVESVSVSKPVESKPNAYQFNDATRIEDWQKKQDLQR
LPDQHSSTPPIELNIHREENLTAQSAAPARKQAQVDAPNLMEINIPNYSDPPPLSPQEKF
ERDQQRIRQQYEEEKRRAREAEKQKQEQEQQTLNSDKFLRDMESQILQTKHEAASQNLID
NEPIRATGTQSGYNSQPMTIRLPANSQGRQLVIDPRNQEGKSDNMLPEYSFRVDLPRTDS
APPLRTFNQPELNPEEILAKEREKIREEEKRKFEQEQQRWKEEKERELREQQELIERERE
QLQREQERVEREKAMLEQKVRQEESYSSRYQPVNSHLRSSAGSSGSSLSQSPRSPPPALD
PKYRETQSKKAPPPTAPKPDRASTKARLTREDLLAMNRKATPLTRPDPSVETTVSGDSHD
NSLSPATREAPSKGELHSLNAVPKPKFHSSAAWIKDRDAENNTQSEKPFVIGKRSDLIHQ
RDYSNPSDHWLVREAEKRRLAEKSDYANIESVTAHAGPTKPSQSSLVSRFRGDIEPPPRS
NRYSYPSSYNSDSRLSPTSRPLSATGSSLNQYNRSPEQTVTQFSAKTSPSTFASNPSLTQ
TLPPNFSFNANVRNQDSMPTKPPRSLTDDSGPVIAVSGKQKCSHCGEELGFGAAMVIESL
SLYYHVQCFRCCVCRMPLGNGSEGTDVRVRVNKLHCRNCYSNDEGSVIEYWGVF
NT seq
5205 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagatacccaagaaaacgaagaggaatggattccgatccgacttcgggaggat
gaggaaatggatttctttacagaacttgctttgcacgaagcggaacggtggatacaggct
gtaacaagaaagaagtttgagtatgctgaagattttaggaagtctcttggaaatggagtt
ctgttgtgcgagttgttaaattgcttgaagccaggcagtgtaaaaagaattaacaaactc
ccaggagctattgctggtctggataatataaatgtattcctgactgcatgcgagaaaaac
tttggcctaaacaagacacagttgtttgacccaactgaccttgaagatttgtcgaataga
gccatttctgatgaatcaagcaatggaggaaatgaatttttcctgaaacaggaagttgat
aggagagcaataaatgttgctgtgactgtgtactggcttggtagaacagtagcaggaaaa
tataagggaccagagcttgatgcgagtgcctttggagctcttgttcatagtcatgggaat
aagaacataatttcagaggattcttttaaaaatggaagtccgctaacaaaggataatcat
aaacatattcgtgatagttcttatgattcacttggatcttacgaacgtgagtctgagtca
agttttgatgagttagatagcagtggtactatgccagtacgttcagacatgcgggaaatg
agaagatacgggagcgctagctcgctgtccatgccgcgtgatcttagactgtcaacagct
agtggcgagtctatgtattctgacgataaacatgatggtatgtatgtaagttcgcctgac
ctctctcaggggtcacatgctcatacaagatcatcatcaactgacagtatggaaggaaat
tattacggtaaccattcccgacagtcgtctggaagtacggacaattatgcaacaagacgg
tctggttcttctagcagtgccaggaaaacaagtacgtctgcaccagatccattacagttt
gtgaaactgaaaggtgctgccgacttggctgcacaagcaaagaagcagatggaagtagca
aaggaggtgaacatgatgcgtggcaaggttgacagtgtcggcagcaatgaagaaccagac
tggcagtcaaattttaacaactggaagtcacgacgtaaatccacacatgctcgattagag
agtgatacattagatgaagaagaagagaaaaggccacagaaaacattcagtcagataatg
gcagaaaaagaaaagagaagaagtgtgggaccaatgagtttgtaccctacagaggatgag
gacattaagatggagaagaaggataagagacgtagccttggagccatgaacttctaccca
ctggaggatgatgacagtggtataggggtaaaaactcgagaatcacacatatccaagacc
aacagccaaaaacaggaatcaaaaccaaagaacaagtcaaaagcagatgtagcaccatgg
gcacatgattccagtggtgaggataacagccaatcagattccgagactaataatagccac
caatcaggtgatacggacagtgtgttttctgacaaatcaacacccagcaaagttttgagt
gatgatgattcttgggtgaaaaataaacagtctgcccagacagtttctagcaaactaacc
ccgccagtgagaacacagaggtcgttaggagatagtatgaaaatatgggaaaacagtgca
aacgaatctcagaaaaaagatgataaaaaagtcaaagatcttccagctaatagtgctaaa
attaggaatataactcaagcatttgaacagaaggataaagaagctaatgcaacacctgtg
gtaacaaaacgttcagaatttagtcgttcttctctttctaaatcgttggatttaacagat
agttattcaaaaccttattcaccgcttgaaaagaaaccaccatcgcctctttcaccgacg
gcacctaaagcgttaactccacgggatcagaggttctcccaaaacttcagtccagtcgga
agtcccgctacgaacagtgcggataagaagtttacagagaagacaattaaaatcaaccag
aaaccaaacaatgataagggttttggattcttcctggttggagggtgtgaaaagagacag
cctgtcacagtacagagggtttctctgggtagtgctgctgatgtatgtgaagttgaggca
aacgatgaactcctctctgtaaatggtagagatgttacgtccttgaccttggcccaggta
cagggcatggtggatcacagtgtgaaaagagggcagattgaactaagaatcaagagatat
atacaagaagagggttatgattcaatggaagagagtgcatttactgacaaggccagtata
aacaacaacaacaagacagatcacttaaatgaaaccagccactataaacctgcactacag
atgtcaacaaggacagaggagaagccacgcttgatggatcaacttataggagagcaacaa
agggaggctaataataatgagagaaacaagagagcacctagtccagtagcagcagaaagt
ttcacagcagacgttagaattcttgcccagtctgcaccagcgcagcagtcaacaccagcg
cagcagacgacaccagtgaagcagacgccaagtccaactcaggatatgagtgcaccacag
gatgtcacactgacagaagagaggtccaccatctctgtgaggaaatcccctgcaagtaca
acccctaaaccagatgagccacctgttcagatgcaatattcaagaacccctgtgaaacaa
gactcacccccacctccaacaccacctaaaacagaacttccaccgttagccaagtataca
gaaagcccaggggtgaccactagcgatgactcctcaggatttggtccaccagctgctctg
ttgagatggcaacgcccacgtgctaaatcagagtaccagaacccattttcaatgtcggca
gcggagaaccagccatcagacagaacaaaacgattgagtgctaccttaccttttaaatcg
gataacacattttcattggacaaagattatagtaaggatgattccatgatggacaaagtg
tctagagactttgtagagtcggtgtctgtgtcaaaaccagtggaatcaaagccaaatgct
tatcagttcaatgatgccacacgtattgaagattggcagaagaagcaggacctgcagaga
ctgcctgaccagcattccagtaccccacccattgaacttaacatacaccgagaggagaat
ttaacagcacagtctgccgcccctgctcggaaacaagcgcaggttgatgcgcctaacttg
atggaaataaatatacccaattacagcgacccgccgccgctgtcaccacaggaaaagttt
gagcgggatcagcagagaattcgtcagcaatatgaggaggaaaagagaagagcccgtgaa
gctgaaaagcagaaacaagagcaggaacagcaaacattgaattcagacaagtttcttagg
gatatggagtcacagatacttcagacaaaacatgaagcagccagtcagaacctgattgac
aatgaaccaatcagagccactggcacacagtcaggttacaactctcagccaatgacaata
aggcttccagcaaattctcagggaaggcaacttgtcattgatccaagaaatcaagaaggc
aaaagtgataatatgttaccagagtatagttttagagtggaccttcctaggacagattct
gctccgccactacgcactttcaatcagccagaactgaatcctgaggagatactggctaag
gagagagagaaaatccgagaggaggagaaacgaaagtttgagcaggaacaacaaagatgg
aaggaagaaaaagaaagagaactgagagagcaacaggaattgattgaacgagaaagagaa
caattacaacgtgaacaagagagagtggagagagagaaggccatgttggaacagaaagtg
agacaggaggagagctattcctcacgctatcagccggtcaatagtcacttgcgaagttca
gctggaagttcaggatcatcattatcacagtctcctagatctccgccccctgctctcgac
ccaaaatatcgagaaacacagtcaaaaaaggctccacctccaactgctccaaagcctgat
cgagcatccacaaaggctcggctgacacgagaggatttgttagcaatgaatcgcaaagcg
acacctttaactcgtccagatccatcagtggagacaacagtttctggtgattcacacgat
aacagtttatctccggccacacgggaagctccgtcaaaaggagagttgcattcattaaat
gctgtgccaaaaccgaaattccacagttcagctgcttggattaaggatagggatgctgaa
aataatacgcaaagtgaaaaaccatttgtgataggtaaaagatcagatcttattcatcaa
agagactattcaaatccatctgaccactggttggttcgtgaggctgagaaacgtagactt
gcagaaaagtcagattacgcaaatatagaaagtgtaactgctcatgcaggaccaaccaaa
cccagtcaaagttctctagttagtcgattcaggggagatattgaacccccaccgagaagt
aacagatattcatacccatcttcctataattctgattcacgtctttcaccgacatctaga
ccgctgtcagctactggatctagtttaaaccagtataaccgcagtccagaacaaacagtt
acacaattcagtgcaaagacttcacctagtacttttgccagtaacccatcattaacacaa
actttaccaccaaactttagttttaatgcaaatgttcggaatcaagacagcatgccaaca
aagccgccaagatctttgaccgatgactctggtccggtgatagctgtcagtggtaaacag
aagtgttctcactgtggagaggaactaggcttcggtgcggctatggtgattgagtccctc
agtttgtactatcatgtacagtgtttccgttgctgtgtatgccgtatgccgctaggtaac
gggtccgagggcacggacgttagagtacgagtcaacaagttacattgtagaaattgttac
agtaatgatgaaggtagtgttatagaatactggggagtattctga
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integrated database retrieval system
