Mercenaria mercenaria (northern quahog): 123558571 Help Entry 123558571         CDS       T07835                                  Name (RefSeq) DNA-binding protein SMUBP-2-like   KO K19036   ATP-dependent RNA/DNA helicase IGHMBP2 [EC:5.6.2.5 5.6.2.3] Organism mmer  Mercenaria mercenaria (northern quahog) Brite KEGG Orthology (KO) [BR:mmer00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03009 Ribosome biogenesis [BR:mmer03009]     123558571    03012 Translation factors [BR:mmer03012]     123558571 Enzymes [BR:mmer01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      123558571     5.6.2.5  RNA 5'-3' helicase      123558571 Ribosome biogenesis [BR:mmer03009]  Eukaryotic type   Other ribosome biogenesis factors    123558571 Translation factors [BR:mmer03012]  Eukaryotic type   Initiation factors    Initiation associated factors     123558571 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA_11 AAA_12 SMUBP-2_HCS1_1B AAA_19 AAA_30 R3H Viral_helicase1 zf-AN1 DEAD nSTAND3 AAA_16 UvrD-helicase AAA_22 ResIII SLFN-g3_helicase AAA_25 IstB_IS21 PhoH UvrD_C_2 Zot Helicase_RecD Znf_XAF1_N AAA Flavi_DEAD ABC_tran Glyco_tranf_2_3 T2SSE NPHP3_N zf-BED Motif Other DBs NCBI-GeneID:  123558571 NCBI-ProteinID:  XP_053400098 LinkDB All DBs Position 5:81096488..81149604 Genome browser AA seq 1066 aa AA seqDB search MEISKHTVESFVSKTLHLLEKERAAEIEETRSLTEKLPSKELQRRGVCLLKLHIGSRKTG LFGRVILSFETHLETLPSHSFSPGDIVGLNISQGDSQSDSLGSGLVTRVSQSAVNVAFDE SHDLFSLDDGPTDYYKLTKLANDVTYKRLKRTLENLNKIRHGECANLVSVLFEEQPLSPP NNLQDLKFINENLDESQQQAVQFALAQKELAVVHGPPGTGKTTTVIEIILQAVKQGNKIL ACAPSNIAVDNLVERLAKCKHRIVRLGHPARLLPHIQKYSLDAILSTSDETKLVEDVRKD LDKTLSGLKKTKNKGERQKLREEMKFLRKELRQRADAATRDILKRADVVLVTLTSATDDG PMKLLEESHFDVTIIDEVSQAMEAACWIPLLRTKKCILAGDHLQLPPTILSNEAAKEGLA VTLMERVLDLYGEKVMKMLTTQYRMNEKIMQWSSHQLYESKLVAHESVKHHLLKDMPGIT QDETSILPLLYIDTAGCDLRELDLPEEISKGNEGEADLVSANVEKLLSCGVNQEDIAVIA PYNLQVELVRLRLASKYPKIEVKSVDGFQGREKEAVIISLVRSNKRGEVGFLSERRRINV AVTRARRHLTVIGDSETVCKDDFLKSLIDYLNLEADVQTAQQYLDDGVLQQCDINRPEHL DDLMVLSKKQGSDKGARPKSYKQNMTAKHGERRQKESQQQERNTQGSKRDPVSEDDSRLI ELQGQIEQFLSNNEADILEFPSTLSGRDRFLVHEVAEKQGLAHTSKGTGDDRFIVVTKPG IRSSSGTTVESGEKGSVDKTAGKENEDKGEKGSVDQTMEKDSEDKGEISYQSRSKKNKKK KKNNENIEIDENVENDEGAVDPLAMDVPGNRTDGMKEFIAPPLTDGKVVCNICKKDVLKA NLQLHEIHCARKERDCKLSKEEKVDVSNKQKKEVSKSSKHRKFDKELAERVEKVDKDDID ALIETVQNMDNFCCFKKCKTSVQTLFQLCAHCQGRYCLTHHIPEVHGCGEAARAQARARI SKDGVLYRGSGVPEKRPDSTKKAHLHRKLDSKLTELAAKRKGKPKK NT seq 3201 nt NT seq  +upstreamnt  +downstreamnt atggaaataagtaaacatacagttgaaagcttcgtttcgaagacgcttcatcttcttgaa aaagagagagctgcagaaatagaagagacaaggtccttgactgaaaagttaccatcaaag gagcttcagcgtaggggtgtatgtttattgaagctgcatataggaagtagaaagacaggc ttgtttggcagggtaatcctcagctttgagacgcatcttgaaaccttaccttcacatagt ttctcaccaggagatattgttggattgaacatctcacagggagacagccagtcagacagt cttggatcaggtcttgtgacaagagttagtcaatcggctgtcaatgtagcatttgatgag tcacatgaccttttctcactggatgatggaccaactgattattacaaactaacaaaatta gccaatgatgtcacttacaaacgattgaagagaactctagaaaatctgaacaagatcaga catggagaatgtgcaaacttggtgtctgtgttatttgaggaacagcccctctcaccacct aacaatttacaagatctgaaatttataaatgagaatctagatgaatcacagcaacaggct gtccagtttgcactggctcaaaaggagttggcagtagtgcatggtccaccaggaacgggg aaaacaacaacagtcattgagattatactgcaggctgtcaaacaaggcaataagatatta gcttgtgcaccttccaacattgcagtagataatcttgttgagagacttgccaagtgtaag catagaattgttcgtctcggtcacccagctaggttactaccacatatacagaaatattct ctagatgccatactatctacaagtgatgagacgaaattagtggaagatgttagaaaagat ttggataaaactctatcaggtttgaagaaaaccaaaaataaaggagaaagacaaaagttg agggaagaaatgaaatttctccgaaaagagttgcgtcagcgggcagatgctgctaccagg gacattctcaaacgtgctgatgttgtattggtcacacttaccagcgccacagatgatggg ccaatgaaacttctggaagaaagtcattttgatgtgacaattattgacgaagtttcacaa gctatggaagccgcttgctggatcccgttgctgaggacaaagaaatgtattctagccggg gaccatctgcagttaccaccaaccatactgtcaaatgaagccgctaaagaaggacttgca gtgaccttgatggaacgtgtccttgacctttatggtgagaaggtcatgaagatgttgacc acacagtataggatgaatgaaaaaatcatgcagtggtcttcacaccagctgtacgagtct aaactggtggcccacgagtctgtgaaacaccatttactcaaagatatgccaggtattaca caagatgagacgagtatattacctctactgtatatagacactgcaggctgtgatctcagg gaactagacttaccagaggaaatatccaaaggaaatgaaggagaggcagatcttgtcagt gctaatgtggagaagttgttgtcatgtggagtaaatcaggaagatattgcagttattgct ccttacaatctgcaggtagaacttgttaggttacgtctagctagtaaatatccaaagatt gaggtaaagtctgttgatggattccaaggtagagaaaaggaagctgtgattatctccctt gtcaggagtaataaaagaggtgaggttggtttcctgtcggagaggagaagaatcaatgtt gctgttacgagagccaggcgccatttgactgtgataggggacagtgagactgtttgcaaa gatgactttctcaagtcgctgatagactatctcaacctggaggcagatgtacagacagca cagcaatatctagatgatggagttttacagcagtgtgatatcaatagacctgaacatcta gatgatttaatggtcctttcaaaaaagcagggatcagacaaaggggccaggccgaagtcg tataaacaaaacatgacagcaaaacacggtgaaagaagacaaaaggaatcccaacagcaa gagaggaacactcaaggaagcaagcgagacccagtcagcgaggatgacagcagactgata gagttacagggtcagattgaacagttcctatcgaacaacgaagctgacattttagaattt ccaagtacgttgtcaggaagggacagatttctagttcatgaggtagcagaaaaacaaggt cttgcccatacaagtaaaggaactggagatgatagatttattgtggttactaaaccaggt atcagaagttcaagtggaacaactgttgaatctggtgagaaaggtagtgttgataaaaca gcaggaaaagagaatgaggacaaaggagagaaaggtagtgtggatcaaacaatggaaaaa gacagtgaggataaaggagagatatcttaccaaagcagaagcaaaaagaacaaaaagaaa aagaagaacaatgaaaatatagaaattgatgaaaatgttgaaaatgatgaaggcgcagtt gatccactagctatggatgtacccggaaatagaactgatggaatgaaagaattcattgca cctccattgactgatggaaaagttgtttgtaatatatgtaaaaaagatgttcttaaagca aatcttcaactgcatgagattcattgtgctagaaaagaaagagattgcaaactgagtaaa gaagagaaggttgatgtaagtaataaacagaagaaagaggtttctaagtcatctaaacat agaaaatttgataaagaattagcagaaagagttgaaaaggttgataaagatgatatagat gctttgattgaaacagttcaaaatatggataatttttgttgttttaagaagtgtaaaaca agtgtacagactctgttccaattatgtgctcactgtcaagggaggtattgtttgacacat cacatacctgaggttcatggctgcggggaagctgcacgggcacaggcccgagcaaggata agtaaagatggggttctgtacagaggaagcggagtgcctgagaaaagaccagattcaact aaaaaagctcatttacatagaaaactagactctaaactgacagaacttgctgctaaaaga aaaggaaagccaaaaaaataa

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