Mercenaria mercenaria (northern quahog): 123559744
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Entry
123559744 CDS
T07835
Name
(RefSeq) ATP-dependent RNA helicase me31b-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123559744
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123559744
03036 Chromosome and associated proteins [BR:
mmer03036
]
123559744
Enzymes [BR:
mmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123559744
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
123559744
mRNA degradation factors
5'-3' decay
Decapping complex
123559744
Chromosome and associated proteins [BR:
mmer03036
]
Eukaryotic type
Gene silencing
piRNA pathway
123559744
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
123559744
NCBI-ProteinID:
XP_053408308
LinkDB
All DBs
Position
10:complement(16259587..16279181)
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AA seq
451 aa
AA seq
DB search
MASLKMDNAVNHSSPGMNDLKGENNDQGWKTKLKVPPKDTRIKTTDVTNTKGNEFEDFCL
KRDLLMGIFEKGWESPSPIQEASIPIALTGRDILARAKNGTGKTGAYAIPILERVDNSKD
EVQAMCVVPTRELALQTSQILIELSKHIGAKVMVTTGGTNLKDDIMRLYEPVHVIVATPG
RILDLMNKNLVKISKCGILVLDEADKLLSQDFKGMLDSIISHLPNDRQILLYSATFPLSV
EQFMKRYLHSPYEINLMDELTLKGVTQYYAFVQEKQKVHCLNTLFSKLQINQSIIFCNST
QRVELLAKKITELGYSCFYIHARMNQQHRNRVFHDFRQGLCRNLVCSDLFTRGIDIQAVN
VVINFDFPKHAETYLHRIGRSGRYGHLGVAINLITYDDRFSLHKIESELGTEIKPIPKNI
DKALYVAEYHTEPDMDDDDHPQKTANGAPKG
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggcttcattgaagatggataatgctgtcaaccattctagtccagggatgaatgatctc
aagggagaaaataatgatcaaggttggaagacaaagttaaaagtcccaccaaaggacacc
aggatcaaaactacagatgttacaaataccaaaggaaatgagtttgaggacttttgtcta
aagcgagacttgctgatgggaatctttgaaaaaggatgggagtcaccatcacctatacag
gaagccagtataccaatagcactgacaggcagggatattttggctcgagccaagaacggc
acaggaaagacgggggcttatgcaataccaatactggagcgggttgataatagtaaagat
gaagtacaagctatgtgtgtagtccctacaagagaattggcattacagactagtcagatt
ctgatagaactttccaaacatattggggccaaagttatggtaaccaccggtggaacaaat
ttaaaagatgacattatgcgactatatgagcctgtacatgttatagtagcaacaccaggt
agaatacttgatttaatgaataaaaacctggtcaagataagtaaatgtggcatcctagtg
ttagatgaggccgataaattgttatctcaggattttaaaggaatgttagatagtatcatt
agccatcttccaaatgacagacagatcttgttgtactctgctacatttcctctctcagtc
gaacagttcatgaaaaggtaccttcacagtccgtatgagattaacctgatggacgagttg
acgctgaaaggtgttacacagtactatgcttttgtgcaagaaaaacagaaagtacattgt
ttaaatacactgttctcaaagttgcaaataaaccagtctattatattctgcaactctact
cagcgtgttgagcttcttgccaaaaagataacggagttagggtattcgtgtttctatatc
cacgctagaatgaaccagcagcataggaatagagtgttccatgacttcagacagggactg
tgcagaaatcttgtctgctcagatttgtttaccagaggtatagatatccaagcagtaaat
gttgtgatcaatttcgacttcccgaagcatgcagagacatatctccataggattggtaga
tctggaagatacggtcaccttggtgtagccatcaacctcattacatatgacgacagattt
tcactacacaagatagagagtgaacttggtactgagattaaacccatacctaaaaacatt
gacaaagctctctatgttgctgagtatcatacagaaccagacatggatgacgatgaccac
cctcaaaaaacagctaatggtgcacccaaaggctaa
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