Mercenaria mercenaria (northern quahog): 123560738
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Entry
123560738 CDS
T07835
Name
(RefSeq) fibril-forming collagen alpha chain-like
KO
K06236
collagen type I alpha
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer04512
ECM-receptor interaction
mmer04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123560738
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
123560738
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mmer00536
]
123560738
Glycosaminoglycan binding proteins [BR:
mmer00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123560738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
123560738
NCBI-ProteinID:
XP_053409040
LinkDB
All DBs
Position
10:complement(50411980..50447498)
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AA seq
1464 aa
AA seq
DB search
MMAFDSVRWAAVLSLLFIVVTAQEDQKEKTPEQCYTDSGKIVDDGESWFPDKDDNCIACI
CENGKVECERLEDCFQDGGELREETSEASETYQYSSIYPGPQGPQGEPGRQGMQGFPGDR
GPDGNPGIPGPPGNVGNNIMPADQAYQNYYQAMYGQKAGYAMGPQYLTANVGPQGPRGPG
GLPGPQGQQGLQGNRGQAGEPGPPGAPGPSGIPGSPGQPGPDGSPGRNGPGGARGVPGNK
GPAGVPGMPGLPGMKGHRGFRGPFGKPGEQGNSGEKGPDGPRGPSGRPGPQGARGIQGER
GQDGSPGPLGLRGVDGLPGQTGPPGNVGNMGSPGYPGVPGLKGEAGAPGPKGARGTQGPR
GENGVPGPPGESGRQGLPGLEGSNGEKGSTGEVGPAGPPGFPGPRGPPGSAGSPGANGPK
GHTGQPGNAGYKGSRGKKGSDGTDGERGPPGPPGSEGKRGESGSAGLQGAPGLPGERGTP
GGRGLPGPSGDPGPPGEQGGIGQRGFRGNDGSPGSPGRPGSPGPIGGRGVPGPQGRDGSV
GRSGPPGPPGNDGRSGEMGQPGIQGVPGLVGQPGNPGSRGSPGREGQTGPMGQPGPPGDS
GAPGATGFPGSPGPQGVTGERGPEGNPGPPGFQGPPGMQGAPGEAGRVGEAGRSGEPGPS
GRPGSMGERGYPGEQGPPGAVGEPGEVGLVGPAGRAGYRGAPGAPGPKGEIGSAGNIGTP
GPRGSPGPPGGKGEVGDPGPNGEDGSPGRAGIPGLVGPPGPPGPVGETPPKGQRGDPGQR
GQVGAPGEEGIRGEAGAPGEDGPPGLAGNAGYPGPKGPTGEPGEKGEQGEQGESGPLGKP
GDTGVRGVRGAKGSRGDTGSQGLPGQTGAPGRPGPQGSPGQQGEMGPPGVTGEEGVKGSR
GHNGPMGQQGEQGIPGLPGYAGQKGAQGESGEAGPPGPNGAPGRQGDQGEPGLPGVMGET
GPMGGVGDRGSQGEPGRPGDDGIPGPQGPPGPPGLTGPVGAPGDTGPPGHDGLPGLAGPR
GDRGMVGDQGLPGPPGATGFMGPPGPSGSPGSSGPRGERGETGPVGSTGASGPRGSPGPQ
GAEGLPGESGSMGETGDKGDPGLIGLMGLPGAEGMQGDDGLPGPPGPPGQRGPDGPRGSI
GMDGQPGPPGPPGSMGRRGPEGVDGRSGPVGPEGAPGPPGPPGQPMYANALGAMFGASTY
KGNPYQADSSSTPQEKEALATLGTVDKKIQKMKAPTGEKDAPAMSCHDFKVHNEEKIVNK
DPMKIMIDPNKGDDYDMMQVSCEFRSKISWTCIHPAKNEFAMQKWVKQPLSKHTWFSDIQ
NETYGGEHSVDYEFRYDANGSQINSLAAVSDIVRQDIWVNCTNTVAYYDDSTQAYDKAVH
LRAFDDKFVLTPGGKRKKKGTLKYTVDESEDGCMYGNGVRQSTRIEVKTRKMSLLPVLDI
AVRDAGGADQEFGFMLGAVCFGNK
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgatggcatttgattcagtgcgatgggcagccgtactctccttgctgttcatcgtagtt
acggctcaagaggatcagaaggagaaaactccagaacaatgttacacagacagcggaaaa
attgtcgacgacggcgaaagctggttcccggacaaagacgataactgtattgcatgtatc
tgtgaaaatggaaaagtagagtgcgaacggcttgaagactgcttccaagacggtggcgag
ctcagagaggagacaagcgaagcttctgagacctaccagtattcctctatctatcctggc
ccacaggggccacaaggtgagcctggacgtcaaggaatgcagggatttccgggtgatcgg
ggaccagatggaaatcctggaataccgggcccacctggtaacgttggaaataacattatg
ccagctgaccaagcctaccagaactactatcaggcaatgtatggtcaaaaggccgggtat
gcaatgggaccacaatatctcaccgctaatgttgggccacagggacctcgtgggcctgga
ggtctgccaggaccccaaggtcaacagggtttgcagggtaacagaggacaagcaggagaa
ccaggaccaccgggagctccaggaccctctggcattcccggctctcctggacagccaggg
ccagatggctcccccggcagaaatggaccaggaggtgcacgtggagttccaggaaataag
gggccagcaggtgtaccaggcatgccaggcctcccaggaatgaagggtcatcgtggattt
agaggtccatttggaaaacccggagagcaaggaaattccggagaaaagggcccagacgga
cctagaggacccagtggacgacccgggccacagggagcacgtggtattcaaggtgagcgc
ggacaggatggatcaccaggacctttgggactgcgtggtgtggacggtctccccggacag
acaggacccccgggaaatgttggaaacatgggatcccccggctaccccggtgtaccagga
ttaaagggagaagcaggtgcccctggtccaaagggggcccgcggaacccaaggaccccgt
ggtgaaaatggcgtaccaggaccaccaggggaatctggccgacagggacttccaggatta
gaaggctccaatggggaaaaaggatctactggagaagtgggacctgccgggcctcctggt
tttcccggacctagaggacctccgggctcagcagggagcccaggagcaaacggaccgaag
ggacatactggacaaccaggaaatgccggatataaaggatctcgagggaagaagggcagt
gatggtactgatggtgaaagaggaccacccgggccccctgggtcggaaggaaaacggggc
gagtcaggatccgcaggactacaaggagctcctggtctgccaggggaaagaggaacacct
ggtggtcgcggtcttcctggaccttctggtgaccctggacctcccggagagcaaggagga
attggacaacgtggtttccggggtaatgatggatctccgggttcaccaggccgccccgga
agtcctgggcctattggaggcaggggagttcctgggccacaaggtcgcgatggatcagtt
ggacgatcaggtccaccgggacctccaggtaatgacggtcgctctggtgaaatgggtcaa
cccggaatccagggagttccaggtctagtaggacagcccggcaacccaggatcaagaggt
tccccaggacgtgagggtcaaactggacccatgggtcagccgggaccacctggagactct
ggtgcaccaggagcaacgggatttccaggatcccctggacctcagggagtaacaggtgag
agaggaccagagggcaaccctggacctccaggttttcagggacccccaggtatgcaggga
gcacccggagaggcaggaagggtgggagaggctggacgtagtggagaacctggcccaagc
ggcagaccgggatctatgggcgaaagaggatacccaggtgaacaaggaccaccaggtgcc
gttggtgaacccggagaagttggattggttggaccagctggtcgcgctggatacaggggt
gctcccggagctccaggtccaaagggtgagattggctccgctggaaatattggtacacca
ggaccacgtgggtcacctggacccccaggaggaaagggagaagttggagatcctggtcct
aatggagaagatggaagccctggtagagcaggaattccaggactggtcggtcctcctgga
cctccaggtcccgtaggagaaacaccacccaaaggccagcgtggagatccgggtcaaaga
ggacaagttggtgctcctggtgaagagggaataagaggagaagctggagctccgggcgaa
gacggaccaccaggattagctggaaatgcaggatatccaggaccaaagggccccactgga
gaaccaggggaaaagggtgagcaaggcgaacaaggtgaatcaggacctcttggcaaacca
ggagatacgggtgtcagaggagtccgtggtgccaagggttcccgtggagacactggatca
caaggtttgccaggtcagaccggagccccaggacgtcccggcccacagggatctcccgga
caacaaggtgagatggggccaccaggagttacaggtgaagaaggcgtcaaaggttcacgt
ggccataatggtcccatgggtcaacagggagagcaaggtatcccgggtctaccagggtat
gccggacagaaaggagcccaaggagaatctggtgaagccggtccacctggacctaacggt
gcacctggcagacagggtgaccaaggagagccgggacttcctggtgtaatgggagagact
ggaccaatgggaggagtcggtgacaggggatcgcaaggggagcccggacgcccaggtgat
gacggtataccaggacctcaaggacccccaggtccaccaggtctgactggaccagttgga
gctccaggagatacgggacccccaggacatgacggcttaccaggactggctggacctaga
ggtgatcgcggtatggttggagaccaaggacttccgggaccaccaggagcaactggattt
atgggaccaccaggacctagcggatcgccaggttccagcggaccaagaggagagagggga
gagaccggacctgtcggatccactggcgcatctggacctcgaggatcaccgggaccacaa
ggtgcagagggtttgcctggtgaatccggatctatgggagaaacgggagacaaaggagat
cctggacttatcggtttaatgggcttgcctggagccgagggaatgcaaggtgacgatggt
cttccagggcctcccggacccccgggtcaacgtggtccagatgggccccgtggatcaatc
ggaatggacggacaaccaggaccgcctggaccaccaggatcaatgggtcgtcgtggtccc
gaaggagtagatggccgctcgggaccagtaggaccggaaggcgcaccaggaccgcccggt
cctccaggtcagcccatgtacgccaatgcccttggggcaatgttcggcgccagtacatac
aaaggcaatccgtatcaggctgatagctcctccaccccgcaggagaaagaagccttggcc
acattaggcactgtagacaagaagattcagaagatgaaggcaccaacaggcgaaaaagat
gcaccagcaatgtcctgtcatgacttcaaggttcacaatgaggaaaaaattgttaacaag
gatcctatgaaaataatgattgatccaaacaaaggcgatgactatgacatgatgcaagta
agctgcgagttccggtctaaaatctcttggacgtgcatccatcctgccaaaaatgagttc
gccatgcaaaaatgggtcaagcagcctttatcgaaacacacgtggttcagcgatatccag
aatgaaacatacggcggagagcatagtgtcgactacgagtttaggtacgacgcgaatggc
tctcagatcaattctctagcagccgttagcgacatagtccgccaagatatctgggtaaat
tgcacaaacaccgtcgcatactatgacgattcaactcaggcatacgacaaagcagttcat
ctcagagcatttgatgataagtttgttctaacaccagggggcaagaggaagaaaaaggga
accttgaaatatactgtggacgaatcggaagatggttgtatgtacggaaatggcgtgaga
caatccacaagaattgaggtgaaaacgagaaaaatgtcgctgttgccagttttggatatc
gctgttcgtgatgctggaggagcagaccaagaattcggtttcatgttaggtgccgtatgc
ttcggcaataagtaa
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