Mercenaria mercenaria (northern quahog): 123561602
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Entry
123561602 CDS
T07835
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K06236
collagen type I alpha
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer04512
ECM-receptor interaction
mmer04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123561602
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
123561602
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mmer00536
]
123561602
Glycosaminoglycan binding proteins [BR:
mmer00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123561602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
123561602
NCBI-ProteinID:
XP_045210022
LinkDB
All DBs
Position
10:50333501..50366452
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AA seq
1405 aa
AA seq
DB search
MVPDTVRWALVCLCAVIGFTEAQRAGALDRKCRKTDDGGFFLPDANKPCYKCFCYGGKAK
CEFTKCNENLDCEVHERVILLGECCPICKKELQSEAERGDNGFDEAPMNVGNIAGDQKAG
PQYPGPVAGGGVGVPGPRGPVGPSGPPGPQGFPGPRGETGESGQPGSPGPRGLPGPPGPP
GLDGEEGLMGETGPPGPTGAPGDSGRPGIPGMPGPKGHRGALGRPGPRGEQGRTGEKGDA
GSTGAPGAPGPSGPIGQPGERGRDGSPGSPGLAGADGKPGERGLPGNNGAPGSPGFPGAS
GPKGDSGEPGSRGLVGLPGPDGQNGSPGQPGEPGPPGVSGQDGEPGGKGDTGAAGAQGAT
GFPGPQGPPGLAGSAGAPGAKGDAGQDGLPGPTGEPGLTGSPGFPGERGLPGLSGQSGQR
GPAGPQGPPGPPGNQGEPGPPGLQGISGQPGNPGFPGPGGDRGPEGERGSDGAPGPPGLM
GPVGSTGPRGVSGPSGNDGRPGPAGPPGPSGEDGKNGEQGAQGAPGLPGSSGLPGPKGEQ
GGPGRPGESGPMGNPGPRGERGVPGEVGQEGPMGPPGASGEVGSPGIQGEPGIAGPIGPP
GAPGENGKTGPNGESGPAGEPGVPGERGATGFPGETGKPGARGATGERGPAGPPGEAGPP
GPEGTFGPRGEPGPQGLSGLPGERGLPGPGGPKGNTGMPGERGRDGQPGEIGQSGPPGPP
GQVGPMSVIMPEKGDPGEPGMPGEPGLPGEGGVMGFAGSAGAVGPPGPAGPPGFPGEPGE
AGPQGVQGNRGPSGYPGEQGPIGNPGQPGKDGRKGGRGPAGPVGLQGTPGTPGRMGVPGV
DGEPGAMGPPGATGAPGQQGSRGEVGAPGTPGKDGTPGLNGQDGAPGDRGNPGPQGLTGA
LGVPGPQGERGPPGYPGLQGQQGPQGPAGEPGMPGESGQRGDDGKPGLPGAPGPMGLTGL
PGEQGSPGMPGQDGAPGPAGRPGERGDQGQIGTPGLQGNPGPMGPPGPAGAEGSQGERGE
RGERGSQGPMGAPGSQGPSGPPGATGEKGDNGARGAKGDKGWPGIPGAQGPPGPSGPSGE
SGRPGPPGPPGQQGSTGPRGINGKDGPMGPTGAPGLSGPRGPQGQDGQQGPAGPPGPPGR
PGPPAYAPVMPRQPYANTYKGPAPDEYGYQYDQAQADQAPEPDEDMFVNLNYILYAVDSM
RRPLGTKTAPGRSCDHIRRHSSIPLEDGDYFIDPGFGDFEPIKVKCKFHLDYAETCIKNK
NKFEDKRWFDRNMSSAWFVEHTTGDQLDYKIRRSQLTLLQRQNDIATQEITFRCHGLRTN
GYQFFANDENPTYIDTSSPRYLSSTKIEKSEDCDYNKWGKSTYKITTKRPGILPVTDFLV
YDVGGEDQLLGVDVGDVCFRPNGRF
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atggtaccggacactgtacggtgggcactagtgtgcctttgcgccgtaataggatttacc
gaagctcagcgagccggggctctcgatcgtaaatgcagaaagactgacgacggtggtttt
tttctccctgatgccaacaagccttgttataagtgcttctgttacggcggaaaggctaag
tgtgaatttaccaagtgtaatgaaaatctagattgtgaggtacacgagagagttattctg
ttaggggaatgctgcccgatctgcaaaaaagagctgcagtccgaagcagaacgtggtgat
aacggattcgatgaagcgccaatgaacgtcggcaacattgccggcgatcagaaagctgga
cctcaatatccaggacctgtagcgggcggaggagttggagttccaggacctcggggacca
gtaggaccctccggtccccctggaccccagggatttcccggcccgcgtggtgaaaccgga
gaaagtggacaaccaggctcaccaggaccacgaggattaccaggacccccaggaccgcca
ggtcttgacggtgaagaaggcttgatgggagaaactggaccaccgggacccactggtgct
cctggtgattctggcagacccgggattccaggtatgcctggaccaaaaggacatagggga
gcactcggacgaccagggcctcgtggagaacaaggaagaactggagaaaagggagacgct
ggatcaactggcgcaccaggagcacccggaccaagtggacctataggacaaccaggagag
cgtggaagagatggatccccgggttcacctggacttgctggtgctgatggaaaacctggt
gaacgcggactaccaggcaacaacggagcacccggatccccaggcttccctggtgcttct
ggaccaaagggcgacagcggagagccaggctctcgtggtttagttggtttaccaggacct
gacggccagaatggtagcccgggccaaccaggtgagccaggaccaccaggtgtatccggt
caggatggtgaacccggtggcaagggagatactggagcagctggtgcccaaggagcgact
ggttttccaggaccccagggtccacctggtcttgccggaagtgctggagcacctggtgct
aaaggggatgctggacaagacggattaccgggaccgacaggagaaccaggattgaccgga
tctccaggatttccaggcgagagaggattaccaggtctttcaggacaatcaggacaaagg
ggacctgcaggaccacaggggccaccaggaccacctggaaatcaaggagaaccaggaccc
ccaggcttacagggtatttctggccagccgggtaacccaggattcccgggtccaggtgga
gatcgcggtccagagggagagagaggatccgatggagccccgggaccaccaggcttgatg
ggcccggtaggatcaactggaccaaggggcgtgtctggaccttcagggaatgacggccga
ccaggcccagcaggtcccccaggcccatctggagaggatggtaaaaatggcgaacaggga
gcacaaggagccccaggtttacctggaagttcaggattgccaggaccaaagggagaacag
ggaggaccagggcgaccaggagagtcgggaccaatgggtaacccaggaccacgtggagag
agaggagtgcccggggaagtgggacaagaaggaccaatgggacctccaggtgcatcgggt
gaggttggatcaccaggtatacagggagaaccaggcattgcaggaccgataggcccaccg
ggagcccctggtgagaatgggaaaacaggacctaacggagaatctggaccagctggagag
cctggagttcctggagaaaggggagcaacaggatttccaggagagactggcaagcctggg
gcacgtggtgcaactggtgaacgtggacccgccggacctccaggagaagcaggaccacct
ggacctgagggaacctttggacctcgaggcgaacctggaccacagggtctttcaggtctt
ccaggagaaagaggtttgccaggaccaggcggaccaaagggaaatacgggtatgccaggt
gaaagaggtagggacggacagccaggagaaataggtcagtcaggacctccgggaccccca
ggacaggtcggccctatgtctgttataatgcccgagaaaggagacccaggagagcccggc
atgcctggagaaccaggtctacctggagaagggggtgtgatgggatttgcagggagcgct
ggtgcagttggcccaccaggaccagcaggaccaccaggattcccaggagaaccaggtgaa
gcaggaccacagggcgttcagggtaaccgcgggccatcaggatacccaggagagcaagga
cccataggcaatccgggacaacctggtaaggatggacgtaaaggaggccgtggaccagct
gggcctgtcggtttacaaggcacaccaggaacacccggacgaatgggagtgccaggtgta
gatggcgaacctggagcaatgggaccacctggagctacaggagctcctggacaacaggga
tcgagaggagaagtaggggcacctggaactcctggtaaagatggcacgcctggtcttaat
ggacaagatggagcacctggtgacagaggaaacccgggaccacagggactgacgggagca
ctaggtgttcctggaccacaaggtgagcgtggaccaccaggctaccctggacttcaaggc
caacagggaccacagggaccagcgggagaacctggtatgcctggagaatcaggccaaagg
ggtgatgacggtaaaccaggattaccaggcgcccctggacccatgggactgactggtttg
ccgggagaacagggttcaccaggcatgcctggtcaagacggtgctcctggaccagctggc
cgaccaggcgaaagaggtgatcaaggacaaataggaactccaggtcttcaaggcaaccca
ggacctatgggaccaccagggcccgccggcgcggaaggaagccagggagaaagaggagaa
agaggagagcgcggatcacaaggaccaatgggtgcccctggaagccaaggaccatcggga
ccaccaggtgctaccggtgagaagggagataatggggcacgtggagctaagggagacaag
ggttggccgggcataccaggggctcagggaccaccaggaccctcaggaccatcaggtgaa
agcggacgtccaggaccccccggaccccctggacagcagggatctacaggaccacgtggt
atcaatgggaaggacggaccaatgggaccaactggtgcgccgggtcttagcggaccaaga
ggacctcagggacaagacggacaacagggaccagcaggtcctcccggaccaccaggacga
ccaggaccaccagcttatgcaccagtcatgccaaggcaaccgtatgccaacacttacaag
ggaccagcccctgatgaatatggatatcagtacgaccaggcacaggccgaccaagcacca
gaaccagatgaggacatgttcgtcaatctgaactacatcttatatgccgttgactccatg
cgccgaccactgggtaccaaaacagccccaggaaggtcctgcgatcacatccgtagacac
agcagtattcctctggaagatggtgattacttcattgacccaggttttggagattttgaa
ccaatcaaggttaagtgcaaattccatttagactatgccgagacttgcatcaaaaacaaa
aacaagtttgaagacaaaaggtggtttgaccgcaacatgtcgtctgcctggtttgttgaa
catacgacaggtgatcagctcgattacaaaatcaggagaagtcagttgactttgttgcaa
cgtcaaaatgatattgccactcaagaaatcacattccggtgtcacggcctgaggaccaat
ggctaccagttctttgctaacgatgagaacccaacatatatcgatacatcatcaccacga
tatcttagctcaaccaaaattgaaaaatccgaagattgtgattataacaagtggggcaaa
tctacatacaagataaccaccaagagaccaggaattcttccagttactgacttccttgtt
tatgacgttggaggcgaggaccaactattaggagtcgacgtaggggacgtctgcttccgg
cctaatggtcgtttttaa
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