Mercenaria mercenaria (northern quahog): 123562398
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Entry
123562398 CDS
T07835
Name
(RefSeq) zinc finger SWIM domain-containing protein 8-like
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mmer04121
]
123562398
Ubiquitin system [BR:
mmer04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
123562398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
123562398
NCBI-ProteinID:
XP_053393302
LinkDB
All DBs
Position
2:complement(97800866..97857951)
Genome browser
AA seq
1829 aa
AA seq
DB search
MMDFMFDWDNDVDRFSFDDSERFEEESMCSWLSETESLNNNWRGWKRQNGGQTSPSFSKS
QEGHPVLSLVELASQTVACNIPYGVVEKYPQPIPEPLQLRITYWSFPDCEEDIRLYSCLA
NGSAEEFQKGDHLYKGKAVKKALQIGFHLSATVDPPHNLPQQKGGYKVAILFDRRRITQC
TCTCNSNALWCSHVVAVCLFRIHQCASVTQRVPVSESLAQLQRDQLQKFAQYLIVEMPKE
ILPIAQGLLDKLISAKECEMNTISGAPDPTAGAEANEETSWCLDEKQLHENVKKTLVKFC
VPSPVVFSDVNFLTQTAPPAAAEWQSLLRPLRGREPEGMWNLLSIAREMFRRSDHNALPL
LEIITDEVLQCEQILIWWFMTKISNNNNNQISSRSSSNSSASITQHAASSLCDEIVNLWK
LAALNPKLSPSQKDDMCAKFKEWHISTIDKVKRARNSNSGSSGGTLKKSEIENFTGFKPG
IEACILQWNDYHIPGVTYSDSQMFSFLRYRFNRNLDPDAKKPSRVQPMAVCSENLISTDD
MTTLAQATNMLNEHHSPQEMKNKRHRHPSRQGQGHNNDGAMSSGSEGFCEPERGSSLFRD
SDSGSEMKEHTSRSNSLEDAESFGLFNLGSRELKQNTSNKIDNQNNDVDSFMELGMQGRN
DEVRPSTSGLSVASAGASVNAEQSSESQVSGDEYSMYFYDRAKATELEKKRKEKSTEEPN
FFAGVKCLENRQDILFARAEALHAHGHTKEACKLAQQLAEELLANPPDLLAESAAVPNVK
GKRKKALTSITMLASTTLSKAAFLCSVLLEEQETWHLAFQMGMFVLEMPRPPASCKSMEV
KLAYQETELLTLLKKIPLGPLEMAILRQRADQLKDGTIKSRGEALLPLTLASFIFDALCL
GACPMTSSLPCMSRQGAAAVCRQPGDEKLGFDGCVASLGMKANVSEAEHPLLCESTRKQR
GELALAMLIHYKDDVIKLSKIMDKLLDKEVHPSYKAPSLVTYLTPRHTANATPPTSAPVV
ASGESRDHSNRDAGRPSVSGGTRASELDEFPPTDDFTDPRPGPSGATSSSGATSSGARPK
TTYTLTYGQSRDTDSSAVEEEGDNYKALEAKLRCMALKKKPSQGMAAIDSSAPETTSSDN
SPTLVRRAWSKHQGPGSDSGSSGDSDSLGSSSSGDKGDLRAKIRDESPVGQMNQRIAATS
QFILDSRSSTPNLKGIRFKGKSRIMPTVPNQPSEASAHWMWEVAKTILNKAGGSSSTSQF
IQPSNTNQPTGPHRNLQLCSFQIGLYALGLQNCVAPNWLSRTYSSHVSWIAGQAMEIGSA
AIHILIDTWEGHLTPPEVASLADRASRGRDHNIVKAAAELALSCLPQAHALNPSEVQRAL
FQCKEQSREMLEKACLAVESAAKGGGVYPEVLFHVAKRWYELSEEAANQPGSDSQQRNGR
ESRPQSAPTVPVAASRSPVQAGSSSPANAQAPPFSNTPPNANQMNQVTVSSAQIFSHNGQ
LATQAVVLPFAIPPVPQPSPHHHPIPHQQTFVQPTYNIVQQIQPFPPYSQSIPMHAQNIH
PYVATFTYNSPMQFNNIPQTAYSSATHYRQLAPGQQVQVLPSQNCQVASIQGILAQQAPL
QLPQQPNEDVNHLHTSGTNPILNPTQAHYLHAAFRVGILAVETLARRVHDDRPQTKYARN
PPMGDDVKWLLNISMKLGTSYLQQFTASVVNAVVSPFLLYDIAIEAAQVLARNNPVAVQS
HLRSGILNPLVQKCLQMFIQCAHQRIHHINTSEYDDFVSIICSARNVFYITPGGMVQFQE
LLQSLRRTKSCRKELWQRIMNGLATPVSL
NT seq
5490 nt
NT seq
+upstream
nt +downstream
nt
atgatggatttcatgtttgattgggacaatgatgtggataggttctcctttgatgatagt
gagcgttttgaggaagagtccatgtgctcttggctgagtgaaactgaaagtttgaataac
aactggaggggatggaaacgtcaaaatggtggacagacaagtccatcattttctaaatca
caagaaggccatcctgttttatctctggtagagctagcctctcagacagtggcttgtaac
atcccatatggtgtggtagagaaatacccccagcctatcccagaaccacttcagcttaga
atcacatactggagcttcccagactgcgaggaagatatcaggctttattcctgtcttgcc
aatggcagtgcagaagagtttcagaaaggagaccacttgtacaaagggaaagctgtcaaa
aaagccctgcaaattggatttcacctcagtgcaacagttgatccgccacataacttgccc
caacagaagggcggttataaggtggcaatattgtttgatagacggaggataacacagtgc
acatgcacttgcaacagcaatgcattatggtgttctcatgttgtagctgtctgtctcttt
aggatacatcagtgtgcctcagtaacacagcgggtaccagtgtcggaaagtctagcccaa
ttacagagggatcagttacagaaatttgcccagtatcttattgttgaaatgccaaaggag
attcttccaattgcacaaggattgctggacaaattgatatctgccaaggagtgtgagatg
aacacaataagtggggctccagatccaacagctggggcggaggccaatgaggaaacttca
tggtgccttgatgagaaacagctccatgaaaatgtgaagaagactttggtgaaattttgt
gtaccttctccagtggttttcagtgatgtgaatttcttgacacagacagcacccccagct
gcagcagaatggcagagtttgttacgcccactgcggggtcgtgaaccagagggcatgtgg
aatctgctgtctatagctcgagaaatgttcagacggagtgaccataatgccttgccactc
ctggaaataatcacagatgaggttcttcagtgcgagcagattttgatatggtggtttatg
acaaagatttccaacaataacaacaaccagatcagttcacgatcaagcagtaacagtagt
gccagtataacacagcatgccgcttctagtctctgcgatgaaattgtcaatctctggaaa
ctggccgctcttaatcctaaactcagtccctcgcagaaagatgatatgtgtgcaaaattc
aaagaatggcatatatctaccattgataaagtgaaacgagcacgtaacagtaattctgga
agtagtggtggtacattgaaaaaatctgagatagagaattttactgggtttaaaccagga
atagaagcttgtatattacaatggaatgattaccacatacctggtgttacatattcggat
tctcagatgttctcatttttacgctataggtttaataggaacttggatcctgatgctaaa
aagccttcaagggtccagccaatggctgtttgctctgaaaatctaataagcacagatgac
atgacaacattagctcaggcaacgaatatgttaaatgaacatcattccccgcaagaaatg
aagaacaagcgacacagacaccccagtagacaaggtcaaggtcataataatgatggagcc
atgagctcgggatctgaagggttctgtgagcctgagaggggaagctctctcttcagagac
tctgattcgggttcagaaatgaaagaacacacatcgcgtagcaattctctagaagatgca
gaatctttcggattatttaatctcggtagtagggaattgaaacagaacactagtaataag
attgataatcaaaacaatgatgttgatagttttatggaattaggtatgcagggaagaaat
gacgaggtacgaccatcaacatctggcctttcagtagccagtgctggagccagtgtgaat
gctgaacagtcttccgaatcacaggtgtcaggtgatgaatattcaatgtacttctatgac
agagccaaagcaacggaattagaaaaaaaaagaaaagagaaaagcacggaagaaccaaat
ttctttgctggagtaaaatgtttagagaatagacaggatatattgtttgcaagagctgaa
gcattacatgcccatggtcataccaaagaagcatgtaaactggcacagcagctagcagag
gaactgcttgccaatcctccagacctacttgctgagagtgcagctgtaccaaatgtaaaa
ggaaagagaaagaaggcactaacaagtatcaccatgttagctagcacgacactgtcaaag
gctgcatttctgtgtagtgtgttactagaggaacaagaaacttggcatcttgctttccag
atgggaatgtttgtcttagagatgccacgcccacctgcatcctgtaaaagtatggaggtg
aaactggcctatcaggagacggagcttcttacattgttgaagaaaattccacttggacca
ttagagatggcaatattacgacagagagcagaccaattgaaggatggaacaattaagtca
cgcggagaggcattgttgcctctgacactagcaagctttatatttgatgctctttgtctt
ggagcatgtcccatgacatcatctttaccatgtatgtcccgtcaaggagcagcagcagta
tgtagacagccaggagatgagaaacttggctttgatggatgtgttgcatctcttggtatg
aaagcaaatgtgtcggaggctgagcatccattgttgtgtgagagtacaaggaaacagaga
ggagaattggccttggccatgctaatacattacaaggatgatgttattaagctgagcaaa
ataatggacaagttgttagacaaagaggttcatccctcatacaaggctcccagtctggtc
acatatcttacacctagacacacagcaaacgcaaccccacctacctcagctccagtcgtt
gctagtggggagtcgagagatcattccaacagagatgccggcagaccttctgtgtctggt
ggaacaagagcttctgagctggatgagttcccaccaactgatgactttactgacccacga
cctggaccatctggagcaacttcaagttcaggggctacaagttctggagcaaggcccaaa
actacatacactttgacttatggccagagtagagacacagatagttcagctgttgaagaa
gaaggagataactacaaagctttggaggctaaactcagatgtatggctttaaagaagaaa
ccatcacagggtatggctgctattgacagtagtgctcctgaaaccacatccagcgataat
tctccaacactggtgcggagggcttggagcaaacatcagggtccaggcagtgatagtgga
tccagtggggatagtgactctttaggctcaagtagttctggggacaagggagatttaagg
gccaaaataagggatgaaagtcctgtcggtcaaatgaatcaaagaattgctgcaacatca
cagtttatcttggattctcgcagctctacaccaaacctgaaaggaataaggttcaaaggt
aaaagtaggatcatgcctacagtgccaaatcaacctagtgaggcttcagcacactggatg
tgggaggtggcaaagactatattgaacaaggctggcggaagtagctccacctcccaattt
atacagccatccaatacaaaccagcccacaggtccacatcgtaatcttcagctgtgttcc
ttccagattggtctgtatgctctggggttgcagaattgtgtggctcctaattggctgtca
aggacgtactcttctcatgtttcttggattgcaggacaagcaatggaaataggcagtgca
gccatccacattttgattgacacctgggaaggtcatctaactcctccagaagttgcttca
ttggctgacagagcatcaaggggacgggaccacaatatagtcaaagctgctgcggaactt
gcattatcatgtttaccacaggctcatgctctgaatccatcagaagttcagagagcttta
ttccagtgtaaagaacagagcagggaaatgttggaaaaagcttgtttagctgtggagagt
gctgctaaaggtggaggggtttacccagaagtgttatttcacgttgccaaacgatggtat
gaattatcagaagaggctgctaatcagcctggttctgacagtcagcagaggaatggaagg
gaaagcagaccacagtcagctccaacagtgccagtagcagcctctcgttctcctgtacaa
gctggaagctcaagcccagccaatgcacaggctcctccgttcagtaacactccacctaat
gctaatcaaatgaatcaagtgactgtatcatcagctcagatattctcacacaatggacag
ttagctacacaagctgtagtgttaccttttgccattccaccggtcccacaacctagtccc
caccatcatcccataccacatcagcaaacatttgtacagcccacgtataatattgttcaa
cagatccagccatttccgccatattcacaatccattcccatgcatgcccaaaacattcat
ccatatgtagcaacatttacatacaacagtcccatgcagtttaacaacatcccacagacg
gcatactcatctgccactcactatcgccaacttgctccgggacaacaagttcaagtctta
cctagtcagaactgtcaggttgcttctattcagggaattcttgcgcaacaggctcctttg
cagttgccacagcaaccaaatgaggatgttaatcatctacacacttcagggactaatcct
atattgaatcctactcaagcgcactatctacatgcagcattcagagttggaattctggcc
gtggagactctagcaagaagagtacatgatgataggccacagacaaaatatgccagaaac
ccaccaatgggagatgatgtcaagtggcttctcaatatctcaatgaaacttggtacaagt
taccttcagcagtttactgccagtgttgtgaatgcagtggtgagtccgttcctactgtat
gacattgctatagaagctgctcaggtgctggccaggaacaacccagtagccgtacagagt
catctcagatctggtatactcaacccacttgtacaaaaatgtcttcaaatgtttatacaa
tgtgctcatcagagaattcatcacattaacacatcagaatacgatgactttgttagtatc
atttgtagtgctagaaatgtgttctacattacacccggaggtatggtccagtttcaagaa
ctgttacagagcttgaggagaacaaagtcatgccgtaaagagctctggcagaggatcatg
aatgggttagcgacgcctgtaagcttatga
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integrated database retrieval system
