Mercenaria mercenaria (northern quahog): 123562447
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Entry
123562447 CDS
T07835
Name
(RefSeq) LOW QUALITY PROTEIN: TATA-binding protein-associated factor 172-like
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmer03021
]
123562447
Transcription machinery [BR:
mmer03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
123562447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
Helicase_C
HEAT
HEAT_EF3_N
TOR1L1_N
Vac14_Fab1_bd
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
123562447
NCBI-ProteinID:
XP_053383704
LinkDB
All DBs
Position
2:complement(108769609..108834678)
Genome browser
AA seq
1743 aa
AA seq
DB search
MSAKYLVVFSRCRRIPMFSILFIYVSKIIILDLLFKFVNNSVFICQVNFYLRSSNWDTRI
AAAQAVHAIAKNVPQWEPRGAPKQGKAVSTKAKNVPQWELRDTPKQGKTVCTKAKKVPQW
ELRDTPKQGKAVHTIAKNTSQQAGCPSIAKNVPQWELRDAQKQGLDDRDRLLIQRQMLNK
RLGLDMAGNLKLDIDKDLFSDEDLLTGMKKDVTVKQDSKHVAVFGVVEAAIGSSSVSKRG
TGLTEKQNADHNGHSRDSPKMLAVNQLWLSDLALRLLSVIALDRFGDYVSDEVVAPVRET
CAQTLGVVIKFLEADGVQGVLCILLQLLTQKQWEVRHGGLLGMKYLLAVRKDMTADFIAK
VLHXIYQGLQDADDDNRAVAASALIPVTDELVQILPQQVDPLIVLSLWKILLDLDDLTAS
LTVALMTLLSALIAHPKANVIDMTAKPLTELVPRLLPFLRHNIPSVRKAALETLKTLLTM
QSTKQSVNTWLPHLLQPLLCHIYQRSLLETQPDILSVVTEVWSCMLSRSPPEFLVAAATP
WMGVWLSLAMRRSMLSHRGGGRQVSDSEDKSSVETKDRPEYIAGYESVNSTVQDRDVYVM
RARTTAAQLLGSLCSKITQPVLGLPENCEKPSESLAKLLVFHLNTKSAVQRIVIAEVVHI
WAATGLCECPEEVKSKLLETLTESIYYDEIALGFTRLQTECRDFIASLKQQGINMDQIIL
PGTILSLDQAQMLVTQVYEQVKPAIKPRSLQTLEDRRSQLHVSVSQITADQQTLAVRVQS
SLAKAVVSLDAIPEKLNPVIRPLMDCIKKEENVYIQREGSKCLSRLLRKCLSRDPCPNNK
VIKNLCGFLCCDPCVTPVCAQINNNSTSEISCDMYKGNLTLAKLNKIPDTDRKRLQRSSS
VNVTVTPEMLKDDEQHSKMLSIQRRGGEITLNTLTSDFSEKVPQELPALWETATKCLNEN
QDSEVDMTDSSAQETVSCLQVLESIGPSVHTSLLPKFVDSLPCLQCYLQNKYTGIRHMSA
RCVGMLSRLSTAEVMLFLIEKVLPMFEASHNDIQRQGASEAIANVIEVLGMDIIPYIVLL
IVPVLGRMTDQHEDVRTVATHCFASLIRLLPLEAGVADPPDIKSSLVERKVEERAFLEQL
LDGSKLENYKIDVPIKAELRKYQQDGVNWLGFLNKYKLHGILCDDMGLGKTLQSICIIAS
DHYRREQKYKESENPDCKPLPSIVVCPPTLIGHWVYEVNKFIDKEYLNPLMYAGPPMERL
KLQKKAKKYNMIVASYDVVRNDIEFFSSFSWNYCVLDEGHIIKNGKTKISKAVKQLNCNH
RLILSGTPIQNNVLDLWSLFDFLVPGFLGTERQFQARYGKPILASREAKSSSKEQEAGAL
AMETLHRQVLPFILRRLKEDVLKDLPPKIIQDYYCDLSPLQVKLYEDFSKSQAQKGVEDC
VTSTKAVEQKKGSTHVFQALQYLRKVCNHPALVLNSSHPKYTEFMGMLKTQYSNLHDISH
APKLTALKQLLLDCGIGVEESSGQPGTDAPVVNQHRVLLFCQLKGMLDIVEKDLLKAQMP
SVTFLRMDGSVPAGSRHDIVNRFNNDPSIDILLLTTHVGGLGLNLTGADTVIFVEHDWNP
MKDLQAMDRAHRIGQKKVVNVYRLITRGTLEEKIMGLQKFKMTIANTVISQDNASLTTMG
TDQLLDLFALEDKKKGESSAPGDSKTVEKKETVKSILEGLGDLWEDDQYQSEYDMKNFMK
SLV
NT seq
5232 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccaagtacttagttgttttttcacgctgtagaaggattccaatgttctctatt
ctgttcatctatgtaagtaaaatcatcatacttgatttattgtttaaatttgttaataac
agcgtttttatctgtcaggtcaatttctatctgagaagcagtaattgggacacaagaata
gctgctgcacaggctgtccatgccatagcaaagaatgtgccgcagtgggaaccgagaggt
gctccaaaacaaggtaaggctgtcagtactaaagcaaagaatgttcctcagtgggaactg
agagacactccaaaacaaggtaagactgtctgtactaaagcaaagaaagttcctcagtgg
gaactgagagacactccaaaacaaggtaaggctgtccataccatagcgaagaatacctcc
caacaggcaggttgtccatccatagccaagaatgttcctcagtgggaacttagagatgct
caaaaacaaggtctggatgaccgcgatagactgttgattcaaagacagatgttgaataaa
cgtcttggtctagatatggcaggaaatctgaaacttgacatcgacaaggatttattttct
gacgaggatttactcacaggaatgaaaaaagacgtcacagtcaaacaagactcgaaacat
gtagcagtatttggggtggtggaagcagcaattggttccagctcagtttccaagagagga
accgggctaaccgaaaagcaaaatgctgaccacaacggccattcaagagattctccaaag
atgttggcagttaaccagttatggttatcagatttagcactcaggttactatctgtgata
gcactagacaggttcggggattacgtctcagacgaggttgttgctcctgtacgagaaact
tgtgctcaaactcttggagtagtgataaagtttcttgaagctgatggtgtacaaggtgta
ctttgtatactgttacaactgttgactcaaaaacagtgggaggttcggcatgggggattg
ctgggaatgaagtacctcctggctgtaagaaaggacatgactgcagatttcattgccaaa
gtgttgcatnttatataccagggcctgcaagatgctgatgatgataacagagctgttgca
gcaagtgctttaatcccagttactgatgaactagtgcagatacttcctcaacaggtagat
cccttgatcgttttaagcctgtggaagatcctactggatttagatgatcttacagcctcc
ctaacggtagcattaatgactctgctttcagctttgatagcacatccaaaagctaatgtt
atagacatgaccgcaaaaccattaacagagcttgtacccagattgttaccatttctgcga
cacaacattccttctgttagaaaagcagcactggaaacattgaagacactgttaactatg
caatctacaaagcaatctgtgaatacctggttaccacatcttctgcaaccattattgtgc
catatataccagagatccctgttagaaacccagccagatattctctcagtagtgacagag
gtttggtcctgtatgctgagccggtcacctcctgagttcctggttgcagcagccacacca
tggatgggtgtgtggttgtccctggcaatgcgcaggtcgatgctctcgcatagagggggg
ggtcgacaagtttcagatagtgaagacaagtcatctgtggagaccaaagatagaccggaa
tatatagccggatacgagtcggttaactccaccgtgcaagacagagatgtttacgtaatg
agggcaagaacgacggcagcacagctgctaggaagtttatgtagcaagattacccagcct
gttttgggtcttcccgagaattgtgagaaaccatccgagtccctggccaaacttctagtc
ttccatcttaacacaaaatcggcagtacagaggattgttatagcggaggttgtacatatc
tgggcagctacagggttgtgtgaatgtccagaggaagtgaaatccaaattgttagaaaca
ctgacagagagtatttattatgatgaaatagctctggggtttacacgtttacaaacagag
tgcagggacttcatcgcctctctcaaacaacagggcatcaacatggatcagattatcctg
cctggaacgatactatcactggatcaagcacagatgcttgtcactcaggtgtacgaacaa
gtgaagcctgccattaaacctcgtagtctacaaactttagaagatcgaaggtcacagtta
cacgtctcagtatctcagataactgctgatcaacaaacactggctgtcagggtgcagtct
agtttagcaaaggctgttgtgtctttagatgccattccagaaaagttaaatccagttatc
cgccccttgatggactgtatcaagaaagaagaaaatgtttatatacagcgggaaggttcc
aagtgtttgagcagactgttgaggaaatgtttgtccagagatccgtgtccaaacaacaaa
gtgataaagaacttatgtggctttttatgctgtgatccctgtgtaacccctgtttgtgca
cagataaacaacaactctacttcagaaattagctgtgatatgtacaaaggaaatctcact
cttgccaaattgaataaaatcccagacactgacagaaaacgtttacagaggtcatcgagt
gtgaatgtcactgttacaccagagatgctcaaagatgatgaacagcattcaaaaatgtta
tcaatccagagacgaggaggggagattactctgaatacacttacctcagattttagcgag
aaagttcctcaggaactgcctgctttgtgggaaactgctactaaatgtctcaatgaaaac
caagattcagaggtagacatgacagattcctcagcccaggaaacagtcagttgtctacaa
gttcttgaatctataggtccatctgtacatacttccctgctgccaaagtttgttgatagt
ttgccgtgccttcagtgttacctacagaacaagtatacaggcatccggcacatgtcggct
agatgtgtgggtatgttatcgagactgtcgacagcggaggtcatgctgttccttatagag
aaagtgttacctatgtttgaagcctcacacaatgatatacagaggcaaggggcttctgaa
gccattgccaatgtgattgaggtgttggggatggatattataccctatattgtattgctg
atagttcctgtgttggggagaatgactgatcaacacgaggatgttagaactgtagctaca
cactgcttcgcttccctcatacgcttactgccattagaggcaggtgtagcggaccctcct
gatattaagtcaagtctggtagagaggaaagtagaggaaagagcatttctggaacaactt
cttgatggatccaagttagaaaattataaaattgatgttccaattaaagcagaacttagg
aaatatcagcaggatggtgtgaattggctcggtttcctcaacaaatacaaactacatggt
atattatgtgatgatatgggactggggaaaactttacagtctatctgtatcatagcttct
gaccattacaggagggagcagaagtacaaggaatcagaaaatccagactgtaaaccattg
ccatccatagttgtctgcccaccgacattgattggacattgggtgtatgaagtgaataag
tttatcgacaaagaatacctcaaccctctcatgtatgctggacctccgatggaaagactg
aagttacagaagaaggcaaaaaaatacaacatgattgtagcatcctatgatgttgtaaga
aatgatattgaatttttcagttctttcagttggaattattgtgttttggatgaaggtcac
atcatcaaaaatggcaaaactaagatctcaaaagcagtgaagcagttaaactgtaaccac
cgattgattctgtctggtacaccaattcaaaacaatgtccttgacctctggtctctcttt
gacttcctggtaccaggtttcttgggtacagaaaggcaattccaggcaagatacgggaaa
ccaatcttagccagcagagaggcaaaaagctcttctaaagagcaagaagcaggtgctcta
gctatggagacattacatcgacaggtgcttccgtttatattgagacgtttgaaagaagac
gttctaaaagatctacctccaaaaattatccaggactactactgtgatcttagcccacta
caggtaaaactgtatgaagacttctccaaatctcaggcacagaaaggtgtagaagattgt
gtcacctctacaaaggcagtagaacagaagaaaggatcaacacatgtctttcaggcttta
cagtatttacgtaaagtatgcaatcatccggcattggtactgaactcgagtcaccctaag
tacacagagttcatgggcatgttgaagacacaatactcgaatcttcatgatatttctcat
gcacctaaacttacagctttaaagcaactgttgttggactgtggtattggagtggaggag
tcaagtggacagccaggtacggatgcaccagtggtcaaccagcacagggtcctcttgttc
tgtcagctcaagggaatgctggatattgtagagaaagatcttctcaaagctcagatgccc
tcggtgacattcctcagaatggatgggtcagtcccagctgggtccagacatgatattgtt
aacagatttaacaacgatccgtccattgacatccttctgcttacaacacacgtgggtgga
ctgggtctcaacttgactggtgctgatactgtgatatttgttgagcatgattggaaccca
atgaaagatctacaggcaatggaccgagctcacagaattggacagaagaaagttgtaaat
gtttatagacttatcacaagaggaactttggaagagaaaattatgggactccagaagttt
aagatgaccattgccaatacagtaatcagtcaggacaatgctagcttgacaaccatgggt
acagatcaactattagacttgttcgctttagaagacaagaagaaaggagagagttctgca
ccaggggatagtaaaactgttgagaaaaaggagactgttaaatcaattctggaaggactg
ggtgatctttgggaagatgaccagtaccagtcagaatatgacatgaaaaattttatgaag
tctctggtgtaa
DBGET
integrated database retrieval system
