Mercenaria mercenaria (northern quahog): 123563394
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Entry
123563394 CDS
T07835
Name
(RefSeq) uncharacterized protein LOC123563394 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123563394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123563394
Enzymes [BR:
mmer01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
123563394
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123563394
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123563394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
123563394
NCBI-ProteinID:
XP_045212085
LinkDB
All DBs
Position
2:17477328..17559966
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AA seq
925 aa
AA seq
DB search
MQTMLPVKRVSVSAAVEIIREEVPPLSLSPVQYDTLPTCKKCQRERTRNRDFKQNKKGKR
KQNRANTPIVIQLKDTLKAAIQQKQKSKRNLLQKQESNENRDEGDVETDNSSDRGDTVLN
KNRQRKNVKNFSAFIEKSNKRETARNVQSNLIEDNPFNEKLVAEFVLNNITDSQMLMKTC
HKKSIVECENVDVICNDLNSNESPIEDTEESEISSTTSSSEIQSDSDVSNPQDSPISQEF
TQEELLQLAEYTTGCPLVRYDCAPSNCPECLWYKEHVKISQGQKYHHAQGSHSTRCFSQP
HHSYSKNRHNKSKKFAHQNQNVPSQKSSATVKINNISNAESDIDDFKSDCPSETSVDTDT
GPLESTSPVSKRSSFSWSSRGDFNSHKQLLDIDIAGKQKKAVFTPGHNDLYLDSVYIDLT
DTDVTFSVYYHHSLTEDESVYSGSYARYTSSNITGTHHHDFMPYYTVPYFQQYMYWSGYY
TPMYSIPMPFYLQPDESLPKTAMVPPKELAKFNASAPPQRQWIPLSRPEPGRPAAIFTVM
CYNVLCDKYCTRQQYGYCPSWGLNWEYRKKGIMDEIRTCAADIISLQEVETDQFFNFFKP
ELERDGYQGIFSPKSRARTMTEQERKHVDGCAIFFRTSKFSLVKEHLIEFNQLAMANAEG
SDQMLNRVMTKDNIGLAALLETREGVFDSSGGLPPEGKIKQPLLVTTAHMHWDPEFSDVK
LIQTMMLMSELKKVVEESYLVIRPDFTGQTVDCNSIPMILCGDLNSLPESGVIEYLSTGR
VASNHIDFKELGYEACLQVFNSHKETSSHLMHKFRLAKAYEDNIMRHTNYTFDFKGIIDY
IFYSRHYMNLLGVLGPMDENWFHENKVVGCPHPHIPSDHFSLFVEFEMPVPYPDISTILN
DDTPVTTSSGNSLGAIGSSRDKHHR
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgcagacaatgttgcctgtaaaacgagtttcggtgagcgctgccgtggagataattcgg
gaggaggttccacctctatctctgtcacctgttcaatatgacacacttcccacttgtaag
aaatgtcaacgagagcggactcgtaatcgagatttcaaacaaaacaagaaagggaaacgt
aagcagaatcgtgcaaatactccgattgtcatccagctaaaagatacgctaaaggcagcg
atacagcagaaacagaaaagtaaacgaaacttgcttcagaagcaagaatcaaatgaaaat
cgtgatgaaggagatgtagagacagataacagttcagatcgaggtgatacagttttaaat
aaaaataggcagcggaaaaatgtaaagaattttagtgcctttatagagaaatcaaacaaa
agagaaacagctcgtaatgttcagagcaatctcattgaagataatccgtttaatgaaaaa
cttgtagcagagtttgttctaaacaatatcacagactcgcaaatgctcatgaaaacatgc
cacaagaaaagcattgtagagtgtgaaaatgttgatgttatttgtaatgatttgaatagt
aacgagtctcctatagaggatacagaagagagtgagatatcatcaacaacatcaagctca
gaaatccagtctgattcagatgtttcaaatccacaagacagtcccattagtcaagagttt
acacaagaagaactcttgcagcttgcagagtatacaactggttgtcccctagttcgctat
gattgtgcaccttctaattgtccagagtgcttgtggtataaggagcatgttaaaatatcc
cagggtcagaaatatcaccatgctcaagggtcgcattcaaccagatgtttttcgcaaccg
catcattcgtacagcaaaaatcgtcacaacaaatccaagaaatttgctcatcaaaaccag
aacgtgccttcccagaagtcatctgcaactgttaaaatcaataacatatcaaacgctgaa
agcgacatagatgactttaagtctgattgtccttcagaaacttccgtagatacggacacg
ggaccactagagagtacttcacctgtgtctaaacgtagctcgttcagttggtcaagtcga
ggagactttaattcccataaacaattattagacatagatattgccggtaagcagaaaaag
gcagtgtttacaccaggacacaatgacctatatctggacagtgtatacatcgatcttaca
gacactgacgtgacatttagtgtctactaccaccatagtttaacggaggatgaatctgtg
tattcaggaagctatgctagatacacatcctcaaatatcacagggacacaccatcatgac
ttcatgccttattacactgtgccatattttcaacaatacatgtactggtctggttattat
accccaatgtacagtataccaatgccattctatctacaaccagatgaatctctcccaaag
acagccatggtgcctccaaaggagctagccaaatttaatgccagtgcccctccacagaga
cagtggatacccctgtccaggccagaaccagggcgaccagcagcaattttcactgtgatg
tgttacaatgtgttgtgtgacaagtactgtacacggcaacagtatggctattgtccatca
tggggcctaaactgggaatacagaaagaaaggcatcatggatgaaatacgtacatgtgca
gcagacatcattagccttcaggaagttgaaactgatcagttcttcaacttcttcaaaccc
gagttggagcgggatggctatcagggtatattttcaccaaaatctcgtgcaagaaccatg
acagaacaggagcggaaacatgttgatggctgtgctatattcttcaggacatcaaaattt
agccttgtgaaggagcaccttatagagtttaatcagcttgcaatggcaaatgcggaaggt
tctgatcagatgttaaatcgtgtcatgaccaaggataacattggccttgcagcgttactg
gaaactcgggaaggtgttttcgatagcagcggtggtctgccccctgaaggaaaaatcaaa
cagcccctccttgttaccacagctcacatgcactgggaccccgaattctcagacgtcaaa
ctcattcaaacgatgatgctcatgtcggagctaaaaaaggtcgtcgaagaaagctacctg
gtcatacgtccagactttaccgggcagacggtcgactgtaattccatacccatgatactt
tgtggtgatctcaattctctcccagaatcaggtgtaatagagtacttgtctactggtcgt
gtagccagcaatcatatagatttcaaggagctaggctacgaggcgtgtctgcaagtattt
aactctcacaaggaaacaagctcccatctcatgcacaagttccgtcttgcaaaggcgtat
gaagataatatcatgcgacatacaaattatacatttgatttcaagggaatcattgattac
attttctactcacgccattacatgaatcttctcggagttctcggccctatggatgagaac
tggttccatgaaaacaaagttgttggctgcccacatccgcatatcccatcggatcatttc
tcattattcgtagaattcgagatgcctgttccgtacccagatatcagtacgatactgaat
gacgatacaccagtgactacgagcagcggaaacagtctaggtgcaatcggatcgtcacga
gacaaacaccacagatag
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