Mercenaria mercenaria (northern quahog): 123563720
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Entry
123563720 CDS
T07835
Name
(RefSeq) DNA topoisomerase 3-alpha-like
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03440
Homologous recombination
mmer03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123563720
03460 Fanconi anemia pathway
123563720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmer03032
]
123563720
03400 DNA repair and recombination proteins [BR:
mmer03400
]
123563720
Enzymes [BR:
mmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
123563720
DNA replication proteins [BR:
mmer03032
]
Eukaryotic type
DNA Topoisomerases
123563720
DNA repair and recombination proteins [BR:
mmer03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
123563720
FA (Fanconi anemia) pathway
123563720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
Zn_ribbon_recom
Motif
Other DBs
NCBI-GeneID:
123563720
NCBI-ProteinID:
XP_053391111
LinkDB
All DBs
Position
2:36094146..36167449
Genome browser
AA seq
1059 aa
AA seq
DB search
MHILKFLKYNYCSITARNMVKVLNVAEKNDAAKSIAEVMSRGRVNRREGFSRFNKIYEFE
YMLFNQRCNMMMTSVSGHLLGMDFIGQYRKWNSCSPASLFDIQVEKYCPENFTDIKRTLE
REVRGAQFLVIWTDCDREGENIGFEVIQVCKAVKPNIQVYRAKFSEITPPAIARACQNLI
QPDKKTSDAVDVRMELDLRIGAAFTRFQTKRLQKIFPNVLADQLISYGSCQFPTLGFVVE
RYKEVQAFIPEPFWKLKVSYKMDDTAVDFNWKRNRLFDYMACFVLYQHCLESPLARVVDT
KGRSKSKWRPQALDTVELEKLASRKLRISAKETMKIAEKLYTNGFISYPRTETNIFAKEI
DLASMVEHQTRDPNWGDFARRVLERGPTPRNGNKTDNAHPPIHPTKYTDNLQGNEKKLYE
FIVRHFLACCSQDAQGFETTVEIDVAEERFTVQGLMVTAKNYLEVYIYEKWSGKEIPVFD
KGDEFQPTSIEMNNGETSPPLLLSEADLIALMDKHGIGTDATHAEHIETIKSRNYVGVRP
DGRFVPGQLGMGLVEGYDAMGYEMSKPHLRAELEADLKKICEGRKQKQEVLDAQVQKYKE
VFIEACRQAEKIDESLSTYLGENAQPAPPEENIEVSSPVMKCPMCGSDMLLKPKKDNKGF
YIGCMGYPNCRSAIWLPDGVLEASVSDSICSQCGPDVHLVNFKFKRGSVPPTVPSQYTGC
VAGCDDTLTTDVGIKAPRPAGSATQTNNGTARSQRDSGYGSSLNSVSSRNYSTQSSVQSN
TGARNNSTISYSARTNQSSNHNTFNNSSFTSPPGQSNQWNNNRTNQNSNRNSGSSRPPLA
TVTGSAGNTGNTESGNEVVCNCGNDAIQLTVRKEGPNTGRQFYKCGSSACNFFLWADEAG
NDGGGGGGGQTANRSVSTSYSSNRYSGNSTNPTPSYHRNQNTDPGESVSCQCGQPAKSLT
VQKEGPNKGRQFFACPAPRGEGCNFFQWGDEQPGGGGFSFGGSSRGDVGRGGGRGGGGVS
RGGGRKRAAPGENGSAIKRSKKCGLCGVEGHTKRSCPHR
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgcacattttgaagtttttaaaatataactattgttcaattactgccagaaatatggtg
aaagttttaaatgttgccgaaaaaaacgatgctgcaaagtcaattgcagaagttatgtct
agagggagagtcaacaggagagaaggtttctcaagatttaacaagatttatgagtttgag
tacatgttgttcaaccagagatgtaacatgatgatgacttcagtgtctggtcatctcctc
ggcatggactttataggacagtacagaaaatggaacagttgcagtccggcatctttgttt
gatattcaggtggaaaaatactgtccagaaaattttacagacattaagcgtacattggag
cgtgaagtgagaggagcccagttccttgttatatggacagattgtgatagagaaggagaa
aatattggatttgaggttatacaggtctgtaaagcagttaagccaaatatacaagtgtac
agagcaaagttttctgagatcacaccaccggcaatagcaagagcatgtcagaacctgatt
cagccagataagaagacaagtgatgctgtagatgttagaatggaactggatctccggata
ggtgcagcatttacaaggtttcaaacaaagaggttacagaagatatttcctaatgttcta
gcagaccagctgattagctatgggagttgtcagtttcctacgctaggttttgttgttgag
agatataaagaagttcaggcatttattcccgaacctttctggaaacttaaagtgtcctat
aaaatggatgacactgcagtggactttaattggaaaaggaacagactatttgattatatg
gcatgttttgtgctgtatcagcattgtttagagtctcctctagcgagagtggtggataca
aaaggtagaagtaagagtaagtggagaccgcaagctctcgataccgtggaattagaaaag
ctggcatcacggaagttacgtatcagtgctaaagaaaccatgaagatagctgagaagttg
tacactaatggatttattagctacccaagaactgagactaatatattcgccaaggagata
gatctggcctccatggtggaacatcaaacccgggacccaaactggggagattttgcaagg
agagtgttagagaggggacctacacctagaaatggtaacaaaacagataatgcccatcct
cccatacatcctacgaaatatacggacaatctgcaggggaacgagaagaaactgtacgag
tttattgtgcgtcatttcctagcttgctgctcccaggatgctcaaggctttgagacaaca
gtagaaattgatgttgctgaggaacgatttacagtccaaggcttaatggttactgccaaa
aattatttagaagtctatatctatgaaaaatggagtggaaaggaaatacctgtttttgac
aagggggatgaatttcaacctacttcaatagagatgaacaatggagagacaagtcctccc
ctgttactgagtgaagcagatctcattgcattgatggacaaacatggaattggtactgat
gcaactcatgctgaacatattgaaacaatcaagtcaagaaactatgttggtgtacgtcct
gatggaagatttgttcctggtcagctagggatgggactggttgaaggttatgatgcaatg
ggatatgaaatgtctaagccacatctgagggcagagttagaggctgacctgaagaaaata
tgtgaaggaaggaaacaaaagcaagaagtgctggatgctcaagttcagaagtataaagag
gtgttcatagaagcttgcagacaggcagaaaagatagatgagtcattatcaacgtacctg
ggagaaaatgcccagccagctccaccagaggaaaacattgaagtgtcctctccagtaatg
aagtgcccaatgtgtggatcagatatgttactgaaaccaaaaaaagacaacaaagggttc
tatataggatgtatgggttatccaaactgccgcagtgcaatatggctgccagacggtgtg
ttagaggcttccgtcagtgatagtatatgttctcagtgtggtccagatgtacatctagtc
aacttcaagtttaaacgaggatctgttccccctactgtaccctcacaatatactggatgt
gtggcgggctgtgatgacacactgactacagatgtgggaatcaaagcacctagacctgct
ggctcagctactcagacaaacaatggtacggctagaagtcagagagattcaggttatggt
agctccttaaattctgtgtcgtctagaaactattcaacgcagtcatctgtgcagtccaac
actggtgctagaaataactctaccataagttacagtgctagaactaatcaaagtagcaat
cataacacgttcaacaactctagctttacctcacctcctggccaatcaaatcagtggaat
aataatcggaccaatcaaaattcaaacaggaattctgggagttctaggccacccttggca
acagtgacaggaagtgcaggtaacactgggaacaccgagtctgggaatgaggtagtgtgt
aattgtgggaatgatgcaatacagcttacagtgaggaaggaagggccaaatacaggacga
cagttttataaatgtggcagttcagcatgtaattttttcctgtgggctgacgaggcaggc
aatgatggtggtggtggtggtggcggacagactgctaataggtcagttagtacaagttat
tccagtaaccgatactccggcaacagtacaaatccaacaccaagttaccatagaaaccag
aatacagatccaggagagtctgtatcatgccagtgtggtcagccagcaaagagtttaact
gttcagaaagagggaccaaacaaggggagacaattctttgcctgtccagctccaagagga
gagggctgtaatttcttccagtggggtgatgaacaacctggcgggggagggttttccttc
ggaggaagcagtagaggcgatgttggtagaggtggtggtagaggtggaggtggtgtaagt
agaggtggtggcaggaagagggcagcaccaggagaaaatgggtcagcaattaaaagaagc
aaaaaatgtggattatgtggggtagaaggtcacacaaaaagatcgtgcccacacagatga
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