Mercenaria mercenaria (northern quahog): 123564296
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Entry
123564296 CDS
T07835
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC1-like isoform X1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123564296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmer03021
]
123564296
Enzymes [BR:
mmer01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
123564296
Transcription machinery [BR:
mmer03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
123564296
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
NTP_transf_9
tRNA-synt_2c
Motif
Other DBs
NCBI-GeneID:
123564296
NCBI-ProteinID:
XP_045213702
LinkDB
All DBs
Position
2:complement(72324338..72429830)
Genome browser
AA seq
1387 aa
AA seq
DB search
MVKEQFREADVAKKISHVTFGLMTADQMGQYSHLQVVSKNLYSQDGLRKPVSYGVLDHRM
GTSEKSNDCETCGRSLADCIGHYGFVDLELPCFHIGYFRTTITVLQMVCKACSRVLLPTD
VRKTFLESFKRPMTYLQRKSAKKKVWERCKKVSVCPYCAATNGMVKKCGLLKIIHDQFKK
TGKGENPVLTDYLGSFEAAIESNKDLEAMLGKNQAVLNPLLVKRVFERICNEDIPLLLMN
SSVAHPKDLILTRILAPPLCIRPSVVSDLKSGTNEDDVTMKLTEIIFLNDVIQKHRATGA
KVQMIMEDWDFLQLQVALLYNSETSGIPLHMQPKKYTRGFVQRLKGKQGRFRGNLSGKRV
DFSGRTVISPDPNMGIDQVAVPIHVAKVMTYPEKVNHANIELMRKLIVNGCDVHPGANFI
QQRHTNIKRFLRYGNREKIARELKPGDTVERHMMDGDIVLFNRQPSLHKLSIQAFFAKVK
PHRTFRFNECCCNPFNADFDGDEMNLHLPQTEEAKAEAIILMGSKANIVTPRNGEPLIAA
IQDFITGGYLITQKNVFFDRARTCQLIASMLASNDETMKIDLPPPCIWKPAKLWSGKQIF
SVLLRPNKQNPVKANLRTKGKNYSSGEDMCVNDSFVVIRNSELLCGSMDKGTLGGGSKNN
IFYVILRDYGEIYTAKCLARLARLCPAYLSNRGFSIGIGDVTPGYGLLKAKYQLLDDGYS
KCDRYIKDLEEGKLPTQPGCTEEETLEAVILRELSVIRDHAGKACLRELHSSNSPLTMAV
CGSKGSFINISQMIACVGQQAISGKRVPNGFEDRALPHFERHSKDPSARGFVENSFYSGL
TPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCSHYDMTVRNSTSDIVQFVY
GADGLDPAAMEGKDRPVDFRRVYDHVRACTKAESRHEQSLGGQEFLSAIEENLALPKYDI
CSEDFKKELRDFCEDVAGKIGKLRHKFHVDSSGKSAPVLYELERITELQVVRFLDCCKEK
YVRACIEPGTAVGAVCAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIMNASKNIS
TPIITAQLEVDNDPEYARIVKGRIEKTELGEVSEYLEEVFLPDDCFILIKLDLERIRLLK
LEVNVGTIKESICASKLKIKPGNVQVHSAAVLTIHPKESAKSSMYYTLQFWKKELSTVRI
KGIPSVTRAVIHIDESKGDNTYKLLVEGDNLRNVMATQGVKGSHVTSNNTIESEKTLGIE
AARTTIMNEINYTMSSHGMSIDIRHVMLLADLMTYKGEVLGVTRFGLAKMKESVLMLASF
EKTADHLFEAAYHGQKDVISGVSECIIMGIPMTVGTGLFQLLHKAEKKPPTKRSLLFDIP
EFHVPGT
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaggaacagttcagagaagctgacgttgctaagaaaataagccatgtgacattt
ggtttgatgacagctgaccagatgggtcagtactcacatctacaggtggtcagtaagaat
ctgtactcacaagatggattgaggaaaccagtgtcatacggggtacttgatcacagaatg
ggaacgagtgagaagagcaatgactgtgagacatgtggtcgctccctcgctgactgtatc
ggccactatggttttgtggatctggagttgccttgctttcatataggatatttccgtacc
accatcactgttctgcagatggtctgcaaggcatgcagcagggttctacttccaactgat
gtacgaaagactttcctggaaagtttcaagagaccaatgacctacctacagagaaagtca
gccaaaaagaaagtatgggagaggtgtaagaaggtgtctgtctgtccgtactgtgctgct
actaatggaatggtgaaaaagtgtggtctactaaaaattatacatgatcagtttaaaaag
acaggaaagggagagaacccagtcctcactgattatcttgggtcgttcgaagctgcaatt
gagagtaacaaagatttggaagcaatgctaggcaagaaccaggctgtgttaaacccactg
ctggtgaaaagagtgtttgaaagaatttgcaatgaagacatacctttgttactgatgaac
tcgagtgttgctcatccgaaagatcttatcttgactagaatcttggctcctccactttgt
attcgtccatctgttgtgtctgacctcaagtccggcacaaatgaggatgatgtaacaatg
aaactgacagagattatattcctcaatgatgtcatacagaaacaccgggccactggtgca
aaggtgcagatgatcatggaagactgggactttctacagttacaggtggcgttactttac
aacagtgaaacttcaggaatacccttacacatgcagccaaagaagtacacaagaggcttt
gttcagagattaaaagggaagcaaggacgtttccgtggtaacttgtctggtaaaagagta
gacttttcaggcaggacagttatctcccctgatcctaacatgggaattgatcaagttgct
gttccaatacatgttgccaaggtgatgacctatccagagaaggtcaatcacgctaacatt
gagctcatgagaaaactgattgtgaatggatgtgatgtccatccgggtgctaatttcata
cagcaaagacatacaaatatcaaaagatttttacgctatggtaatcgggagaagatagcg
agagaattgaagccaggtgacacagtagaaagacacatgatggatggggatattgtcctc
tttaacagacaaccttcactacacaaactcagtattcaggcattctttgccaaggtgaag
ccacacaggacatttcgtttcaatgagtgttgctgtaacccattcaatgctgattttgat
ggagatgaaatgaacctacatctaccacagacagaggaagccaaggctgaggcgatcatt
ctaatggggtctaaagctaatattgtcacaccaaggaatggagaacctttaattgctgct
attcaagatttcataactggcggctacctgattacacagaagaatgtgttctttgataga
gctcgaacttgtcagctgattgcatcaatgttagcatcaaatgatgaaacaatgaaaata
gatcttccaccaccttgtatttggaagccggccaagttatggtccgggaagcagatattc
agtgttctgctacgccccaacaaacagaacccagtgaaggcaaacctgagaaccaagggc
aaaaattacagctctggggaagacatgtgtgtcaatgattcttttgttgtgatcaggaac
agtgagctgttgtgtggttctatggacaagggaactctaggtggaggttccaaaaacaac
atcttttatgtgatattacgtgactatggtgagatctacacagccaaatgtctggcaaga
ctggctaggctctgtccagcatatctcagtaatcgaggattttctattggtattggtgat
gtgacacctggttatggtctgctgaaagccaagtaccagctgctggatgatggttactct
aaatgtgatcgttacataaaggatctggaggaaggcaaactacctacacaaccaggctgt
actgaggaggagacccttgaagctgtgatattgcgagagttgtctgtgattcgggaccat
gcaggaaaggcgtgtctgcgtgagttacactcgagcaacagtccactcactatggcagta
tgtggatcaaaaggatcatttatcaatatatcccagatgatagcatgtgtaggacagcag
gcaatcagtggtaaacgtgttcccaatggatttgaggatcgggcactacctcactttgag
agacactcaaaggatccgtcagcccgtgggtttgtagagaacagtttttacagcggtttg
actcctactgagttctttttccacactatgggaggtcgagaaggtctcgttgacactgct
gttaaaactgcagaaactggatatatgcaaaggcgtctagtcaagagtttagaagatctg
tgttcacattatgacatgacagtacgtaattcaaccagtgatattgtacagtttgtgtat
ggagcagatggactggatccagcagctatggagggcaaagataggccagttgatttcaga
cgggtatacgatcatgtcagggcctgtactaaagcagaaagcaggcatgaacagtcactg
ggtgggcaagagttcctctcggctatagaggaaaacctggctctacctaaatacgatatt
tgtagcgaggactttaaaaaagaactaagagatttctgtgaggatgtggcagggaagata
ggcaagttgagacacaagttccatgttgattccagtggaaagtctgctccagtattgtat
gagttggagaggataacagagttgcaggtagtgaggtttttagactgctgtaaagaaaaa
tatgtgagagcatgtatagagccaggaacggctgtaggagctgtatgtgctcagagtata
ggagaacctggaacacagatgacactgaaaaccttccattttgctggtgtggcctccatg
aatatcactcagggtgtaccgaggataaaggagataatgaatgcctctaagaatatcagt
acacctatcatcactgcacagcttgaggtggacaatgatccagaatatgctcggattgtc
aaaggtcgaattgaaaaaactgaacttggagaggtatccgagtacctagaggaggtgttt
ctacctgatgattgttttattctaatcaagcttgacctagaacgtatcaggttactcaag
cttgaagtcaatgtgggtacaatcaaagaatccatttgtgcttctaaactaaaaataaaa
cctgggaatgtacaagtacacagtgcagctgtactcacaatacatccgaaagagtcagca
aagagttctatgtattatacactgcagttttggaagaaagaactttccacagtcaggata
aagggcataccctcagttacccgtgctgtgatccacattgatgagagtaaaggcgataac
acatacaagttgcttgtagaaggtgataacttaagaaatgtaatggccacccaaggtgta
aaaggttctcatgtgacatccaacaatacaatcgaatcagagaaaacactgggcatagag
gctgcaagaactacaatcatgaatgagatcaactatacaatgagtagtcacggaatgagt
atagatatacgtcatgtcatgttactggcagatctcatgacatacaagggtgaagtgttg
ggtgtgacaagatttggtctggctaagatgaaggagagtgtactgatgctggcttctttt
gaaaagacagctgaccatctgtttgaggcagcataccacggacagaaagatgttatatca
ggtgttagtgagtgtataataatgggaataccaatgacagtgggtaccgggcttttccag
ctgctgcataaagcggaaaagaaaccacccactaagaggtcactgctatttgatatccca
gagttccatgttccaggaacatga
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