Mercenaria mercenaria (northern quahog): 123564335
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Entry
123564335 CDS
T07835
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123564335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123564335
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123564335
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123564335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
MYO10_CC
Motif
Other DBs
NCBI-GeneID:
123564335
NCBI-ProteinID:
XP_045213772
LinkDB
All DBs
Position
2:74887307..74957142
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AA seq
778 aa
AA seq
DB search
MAGNRKLQGEIDRCLKKVQEGVDTFEDIWQKVYNSANANQKEKYEADLKKEIKKLQRQRD
QIKTWLSSSDIKDKRILVDNRKLIETQMERFKVVERETKTKAYSKEGLGAASKLDPAAKE
KQEVTNWISVQIDSLNIQTDKFESEIEQLSTGNKKKKMDKEKGDRYEHLKAAQDKHTYHI
QKLETIMRMVDNDALPLEQIKGIREDIEYYVDSNQDPDFEENEFVYDELELDDLDPSLHS
ATSPPHDEDRFSDKLSTTPTSTNSSSPSPSPGITNHSKDDERKKHKSNEDIRNKNNSATP
SSSSSSSSSAGSSSKLPNTPTKINSYDYIFSNQQSINCIETNSNHLPNTTPPTHGWLDGQ
NSNSGSPISSRIQNNVPPSVWQRTPSSTAAMTMRQLNFSELSSPTSDTTKSQSNSLTNHV
SGLSSSVSSSVLVNSITSSINSSVNSVSPNSVGNPSIPPHGALPLLNNGLGKESVSPPML
SSPVSSSAVNSNNNSLITSLSSSLSSTLTSSQANAMNSLSTSKTEILPGVMNGPLNAGGA
LHKDVLSEEMSSLKSIAQQAVMNAGLENQIPSSTDTTSSDTKVPFNSTVSQLSPQPSPGS
QDGSITNQQVPQTTTIHLNRLLGVAPLGPVPLVKEHLYQLTMGEAAFHHLPHPSDSERLR
HYLPRNPCPTPPYYPQLPPPHADSVEFFQRLSTETLFFIFYYMEGTKAQYLAAKALKKQS
WRFHTKYMMWFQRHEEPKTINEDYEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLN
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atggctgggaatcgaaagctgcaaggtgaaattgacagatgcttgaaaaaagtacaagaa
ggagttgatacttttgaagatatttggcagaaggtgtacaattcagccaatgctaaccaa
aaagagaaatatgaagctgacctcaagaaagagattaagaagttgcagcgccagcgtgat
cagattaaaacctggctgtcaagtagcgacatcaaagacaagcgaattcttgtcgataac
agaaagttgatagaaacacaaatggagaggtttaaagtggtagaacgagaaaccaaaaca
aaggcatattcaaaagaagggcttggagcagcatcaaaacttgatcctgctgctaaagaa
aaacaagaagtcacaaactggatttcagtacaaatagacagccttaacatccagacagac
aaatttgagagcgaaatcgaacaactttctacaggcaataaaaagaaaaaaatggacaag
gagaagggtgaccgatatgaacatttaaaagctgcccaagacaagcacacatatcacata
cagaaactggaaacaataatgagaatggtggataatgatgctctgcctcttgaacagatc
aaaggaatccgagaagacatagaatactatgttgactctaatcaagacccagatttcgag
gaaaatgagtttgtttatgatgaattagagctagatgatttagatccatcattacattca
gcaacgtcaccacctcatgacgaagatcgattttcagacaaattgtcaacaacgccaact
tccacaaactcgagttccccatcacctagtccaggaattacaaatcattccaaggatgat
gaaagaaaaaagcataaatctaatgaagacataagaaacaaaaacaacagtgcaacacca
tcatcatcatcgtcatcatcatcatcagccggttcgtcaagtaaactaccaaatacacct
acaaaaatcaacagctatgactatattttcagcaatcagcagtctatcaactgtatagaa
accaatagtaatcacttgccaaatacaactccgcccacacatggatggttagatggacaa
aatagtaattcaggttcccctatatcttcacgaatacaaaataatgtgccgccctctgta
tggcagcgaaccccctcttctacagctgctatgacaatgaggcaacttaactttagcgaa
ttatcctctccgactagcgatactacaaagagccaatcaaattcattaacaaatcatgta
tcaggactttcaagcagtgtgtctagcagtgtgttagtgaacagtataacatcatctata
aacagttcagtgaactctgtctcacctaacagtgtaggaaatccctccatcccgcctcat
ggggcgctgccattgctcaacaacgggcttggcaaggaatcggtttcgcctccgatgttg
tcatctccagtatcgtctagtgcagtaaacagcaacaacaatagtttaatcacttcatta
tcatcatcgttatcatcgacactaacttcatctcaggcaaacgcaatgaacagtttgagt
acgagtaaaacagagatattgccaggtgttatgaatggacctttaaatgctggaggagca
ttacataaggatgtgttgtcagaagagatgtcatccttaaaatctattgcacagcaggct
gtgatgaatgcaggtctagaaaaccagataccatcatcgacagacacaacgtcatctgac
acaaaagtgccattcaacagtacagtgtcacagttgtcacctcaaccgagtcccggttct
caggacggaagtataacaaatcaacaggttccacaaaccacgacaatacacctcaatcgg
ttattaggagtggcaccactggggcccgttcctctagtaaaagaacatttataccagctt
accatgggagaggcagcattccatcatctgcctcatccgtcagattctgaaagattacgg
cactacttgcctcggaacccgtgtcccacaccaccgtattatcctcagttacctccacca
catgcagattcagtagaattctttcaaagattatccactgaaactctgttttttatcttt
tattatatggagggtaccaaggctcaatatttggcagcaaaagcattgaaaaaacagtca
tggcgttttcatactaaatatatgatgtggtttcaacgacacgaagaaccaaagacaata
aatgaagattatgaacagggcacatatatttattttgactacgagaaatggggccaaagg
aaaaaggaaggatttacatttgaataccggtatttggaagatcgggacttgaactga
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