Mercenaria mercenaria (northern quahog): 123564506
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Entry
123564506 CDS
T07835
Name
(RefSeq) exosome complex component RRP46-like isoform X1
KO
K12590
exosome complex component RRP46
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123564506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123564506
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
123564506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
SPRING1
Motif
Other DBs
NCBI-GeneID:
123564506
NCBI-ProteinID:
XP_045214082
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All DBs
Position
2:86885561..86901233
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AA seq
232 aa
AA seq
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MYVYFAYLTDITMKSTKGTEVVTLRPLTCEMGQLSRPDGSATTFQGDTCVTVSVYGPGEV
RINKEQLDRATIDVVYKPKSGLPACADKAREKVIRHTCESVLLANLHPRSSINVTVQEVQ
DSGSFLATCVNSCCLALLDASISMKCTMAAVGCCIDFENEIILDPTKQQEERSKATMTFV
FDSKDLKLLTVVAEGKYTREQFQRCLIVCKEASESVFSFFRDSVKRKLSKTV
NT seq
699 nt
NT seq
+upstream
nt +downstream
nt
atgtatgtgtattttgcttacttgaccgacataacaatgaagtcaacaaaggggacagag
gttgtgacacttaggcctctgacttgtgagatgggtcagttgtctcgtccagatggttca
gctactacctttcagggagacacatgtgtaacagtgtcagtgtatggaccaggtgaagta
aggattaacaaggaacagttggaccgtgcaaccattgatgttgtgtataaacctaaatct
gggctgcctgcatgtgcagacaaagcacgggagaaagtaattcgacacacgtgtgaaagc
gtgttgcttgcaaatttacatcccagatcttcaataaatgtcacagttcaggaagtgcaa
gattctggctcatttctagcaacttgtgttaatagctgttgcttggcactcctagatgca
agcatcagtatgaaatgtacaatggcagctgttggctgctgtattgattttgaaaatgag
attattctagatcctacaaaacaacaggaggaacggtctaaggcgactatgacatttgtt
tttgacagcaaagatttgaaacttctgactgttgtagcagagggaaaatatacccgtgaa
cagttccagagatgtttgattgtttgtaaagaagcaagtgaatctgtattcagtttcttc
agagatagcgttaagagaaaattgtctaaaactgtatag
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