Mercenaria mercenaria (northern quahog): 123564512
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Entry
123564512 CDS
T07835
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123564512
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
123564512
3'-5' decay
Other 3'-5' decay factors
123564512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
ResIII
AAA_19
PhoH
zf-C2H2_jaz
UvrD-helicase
MOV-10_Ig-like
AAA_16
zf-CCCH
PAM2
zf-C2H2_4
UvrD_C
AAA_22
TPR_1
zf-met
Bac_DnaA
zf_CCCH_4
Motif
Other DBs
NCBI-GeneID:
123564512
NCBI-ProteinID:
XP_053383066
LinkDB
All DBs
Position
2:complement(87112983..87156779)
Genome browser
AA seq
1709 aa
AA seq
DB search
MMDNEAEEEAPPQTQGQSSRHQGHGASQRARANEMTVNTTIAAVTELIKLKKFHEALEYC
NRGLTQCGNNEKLLEKKIKILCHQGNFEDAYSEALIWLQREPRHPIAIKELKRLKIVLDA
LKDQDSDEELPPAIPVQKTDMLDTSTLAQPSAHQTVTQQVYAPPNANNSAKPAQSIDLSC
SFCNMTFDTKSDLDTHCRSDEHKKNITSDEGHSWKYRPPPRGLVADDYTLCQRYTASGRC
PYADKCIEAHSAEELEEWRERFKFKRQQLQMAKDKHLHGNTYPEQLMEKLMTAEYPKSVM
VASVDYAKVIVNSDLKVNMISKKCTHAWTFTITSKICILRVVLLDEAVSNYFYISSISVG
PKKTQKYQNLENHCQEWKNPEITINRPGEYVYRVKVVFKTDIYGTFRETLVFDFGSEPVL
SRDMHVESAPVTDTEKVLSEIRLSQQGRWLADQVQIVEYKQKAPEDQKSIDLLKKYSLPG
MNKFKFSEHLMQTPTKENYRLWMHQMLYVEELSQIDKISKFNITTSLQLVNRFLLMPGSL
SAAKFAQDGELFARMKLEDDLSVDSVAGRLILKSTNLVWLAPHKPGSKNNALPKKVYEAV
IEDRGKNFIFLRLSSECVEELQLTCDQEFSVEVQFQLNRLHFCEMHHAVDALSTLDIVFP
PTPSLTMMPPVDWTWKEDVGDRTNEDQREAIRKCAAYSHMAVPPLLIVGPFGTGKTYTLA
QCAKHVLLEENTRILICTHSNSAADIYIKEFLHPYVMEGNLEARPLRVYYRHRWIQTVSE
TVLQYCIQEQSGPQAGTFRAPQVEDVEKHRVVITTLSTARLLSDLDLPAGFFTHIFLDEA
AQALECDMLIPLSLAGPHTRVVLAGDHMQMSPEAFSDFARQQEFHKSLLERLYDMYPDES
PSKVMLCENYRANRAIIEFTSELFYDNKLKASKDPIAHSVYYPLTFFTARGEEVQHENSS
GYFNIAEIYEIIEQVDHLQKHWPPEWGDFDENSICVVAPYSDQVMHIRSELRKKKMFKVS
VERVVNVQGKQFRVIVMSTVRTRFTCPTDAAAADKLDLGFLSNIKLLNTAITRAQSLVIA
VGDPVSLCLAGRCSKVWEYYIEVCNDNNSFFGMTEPHLRSLLNNAEMTKTYILNPLAPEF
IPKASYPGQQGQPVFITHPGQVGQAVGWPPNHPAAYRGPQPSGPFMDMLSFNGNPYMPMM
YPSPYQPYHPYMGPLVYRPHPGMYPAMGGKGQVRGTLPKQSAANKAKVAAQPVLPVQRDD
EDRSDSPRATATPPKSAASKQQSGTLGSQSTKKSGQKRMVTVNMVPRMPMYQPYYPYPQY
VIPPEDPRYMQMAMQAPYYYSYPNMPRPPYPYMMPQPVHVQMQPRPGSGSVSPASSSDGA
VKGNHPTSPTDSSQSDALSMSPGSNTGQHIQLLPNVKHVPTHLLYGTPGSGSNSRSSTPV
LTSSPAPQQQGGIAKDSPRNSQGEMEFPTFRRRQHSGPRPVSQSPSYSSQGSHESSTSPV
LNGDQASTVYKTETQTGVHTETIVKSQSQSISKSEKQTIAAKAPRALKLNTNTTGFSRQF
SDELGTPTEITNIVRMIEENIDEVDEEDVERTADMLFRKEAMHHSKPSPPAGKLFLNLPV
RTPASDPPQSSSGSSHEEDPMPSYARAVRQQLPSYRETDFDPSMLEPQTPMTPAGFHTPG
TDINTDPLELLRNLNINNDNLNRSAHGHF
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atgatggataacgaggcagaggaggaggcaccacctcaaacccagggtcagagttcacga
catcagggtcatggtgcaagtcaaagggcacgtgcaaatgaaatgacagtcaacacaaca
atagctgcagtcacagaattgataaaactaaaaaagtttcatgaagctctagaatactgt
aatagaggtctgactcagtgtggtaataatgaaaagcttctagagaaaaagattaagatt
ctgtgtcatcagggtaacttcgaagatgcttacagtgaggcacttatctggttacagagg
gagcccaggcacccaatagcaataaaagagctaaagagattgaagattgttctagatgca
ctgaaggaccaggactcggatgaagaactgcccccagctatacctgtacagaaaacagac
atgctcgacacttcaaccttggctcaaccatcagctcatcaaacagttacacaacaagtg
tatgccccgcctaatgctaataactcagcaaaaccagctcaatccattgacctgtcctgc
tcattttgtaacatgacctttgatacaaagagtgaccttgacactcattgccgtagtgat
gaacacaagaagaacataacctcagacgagggacacagttggaaataccggccacctcct
cgaggccttgtcgcagatgattatacattatgtcaaaggtacactgcaagtggacgttgt
ccttatgctgacaagtgtattgaggcccactctgcagaggagctggaggagtggcgagaa
aggttcaagttcaaacggcagcaactacagatggcaaaagataaacatctccatggtaac
acatacccagaacagctcatggagaaactcatgacagcagagtatcccaagtctgtgatg
gttgctagtgtagattatgcgaaggtgatagtaaactctgatctcaaggttaacatgatc
tccaagaagtgcacacatgcgtggacattcaccattaccagtaaaatttgtatattacga
gtggtattacttgatgaagcagtgtcaaattacttctacatatccagtatatctgtcggt
ccaaagaaaactcagaaatatcagaatctggaaaatcactgccaggaatggaaaaaccca
gaaatcaccataaacagaccaggggaatatgtatacagggtgaaagtagtgtttaaaaca
gatatatatggtacatttcgtgagaccctggtgtttgattttggatctgagccagtgttg
agtagagatatgcatgttgaatcggctcctgttacagatacagaaaaagttttgtcagaa
atccgacttagtcaacagggacgctggctggctgatcaagttcaaatagtagaatataaa
cagaaggctcctgaggaccagaagtctatagacctgctgaagaagtactctctgccaggt
atgaacaagttcaagttctcagaacacctcatgcaaacaccgaccaaggagaactacagg
ctctggatgcatcagatgctttatgttgaggagctctcacagattgataaaatatccaag
tttaacatcaccacatcattacagctagtgaatcgtttcttgttgatgccagggtccctg
tctgcagccaaatttgcccaggatggggaactgtttgcacgtatgaagttggaggatgac
ctctctgttgactcagttgcaggacgactgattttaaagagtacaaaccttgtgtggctg
gccccacataaacctggatccaaaaataatgcactacctaaaaaggtttatgaagcagta
atagaggacagaggaaagaactttatatttttacgactgtccagtgagtgtgtggaggaa
ctgcagctcacctgtgaccaggaattttctgtagaggttcagttccagttgaatagactt
catttctgtgagatgcaccatgctgtagatgccctatccactctcgatatagtcttccca
cctacaccatccctcacaatgatgcctccagttgactggacatggaaagaggatgttgga
gacaggactaatgaggatcaaagggaggctatcaggaaatgtgcagcatattcccatatg
gcagtacctcccttgcttattgttggtccttttggaactggcaaaacatacaccttggca
cagtgtgcaaaacatgtcctgctagaagaaaacacaagaatattgatatgtacccattct
aatagtgctgctgatatttacataaaagagtttttacatccgtatgtaatggagggtaat
cttgaagcgcgaccactgcgagtttattaccgtcaccgttggatacagactgtctcagag
actgttctacagtattgtatacaggaacagtccggcccacaagctggtactttcagggcc
ccacaggtagaagatgtagagaagcatagagtagttatcactacattgagtacagctcgg
ttactgtctgacctggaccttcctgcgggattcttcactcatatattcctggatgaagct
gcacaggcattggaatgtgacatgctgattcccctgtccctagcagggcctcatactaga
gtagtactagccggggaccatatgcagatgagtcctgaagcattttctgactttgcaaga
caacaagagttccataagtctttactagaacgtctgtatgatatgtacccggatgaaagt
cctagtaaagtgatgctgtgtgagaattaccgtgccaacagagccatcattgagttcaca
tcggagctgttttatgataacaaactgaaggcttctaaagatcctatagctcatagtgta
tactatcctctgacattcttcactgcgagaggagaggaggttcagcatgaaaatagctca
ggatattttaatattgctgagatctacgagataattgagcaggtggatcatcttcagaaa
cactggcctccagaatggggtgactttgatgagaacagtatatgtgtggtggctccctac
tctgaccaggtgatgcacatcagaagtgaactgagaaagaagaaaatgttcaaagtgtct
gtggagagagttgtaaatgttcaaggaaagcagtttcgtgtgatagtgatgagtacagtg
cgtacaaggttcacatgtccaactgatgctgcagccgcagacaagctagatctaggcttc
ctgtccaatattaaacttttaaatacggccataacccgcgcacagtcgttagttatagct
gtgggtgaccctgtctcgttatgtctggctggaaggtgcagtaaagtatgggagtattac
atagaggtttgcaatgataacaacagtttctttgggatgactgaacctcacttgaggtcc
ctgctcaacaatgcagagatgacaaagacttacatactcaaccctctcgccccagagttc
attccaaaagcctcatatcccgggcagcaaggacagcctgtatttattacacatcctggt
caggtgggtcaagcagttggttggcctcctaatcatccagcagcatacaggggaccgcaa
ccatcaggaccctttatggatatgctatcctttaatggaaacccatatatgccaatgatg
tacccatcaccttaccagccatatcacccatacatgggaccacttgtatacagaccccac
cctggcatgtaccctgcaatgggagggaaaggtcaagtgaggggaactctacctaaacag
tctgcagcaaacaaagctaaggtggcggcacagccagtccttcctgtgcagcgagatgat
gaagaccggagtgactcaccgagggcaacagccacgcccccaaaatctgcagcatcaaag
cagcagtctgggacattgggatcacagtctacaaagaaatctggccagaaaaggatggtg
acagtaaatatggtgcctagaatgccaatgtatcaaccgtactacccttatccgcagtat
gtcatcccaccagaagatccaaggtacatgcaaatggcaatgcaggctccatattactac
tcctatcccaacatgccacgcccaccatacccttacatgatgcctcaaccagttcatgtg
caaatgcagccaagacctggttcaggaagtgtgtcgcctgcaagttcttcagatggcgct
gtgaaagggaaccaccctacatcccctactgatagtagtcaatcagatgcactatctatg
tcaccaggttcaaatactgggcagcatattcagttacttccaaatgttaaacatgttcca
acacacttgctgtatggtacaccaggaagtggcagtaactcgcgctccagcactcctgtt
ttgacaagttcgcctgcacctcagcagcagggtggcatagcaaaagatagccccaggaac
tctcagggagagatggaattcccaacatttagaagaaggcagcatagtggcccacgacca
gtctctcagagtccaagttacagctctcaaggttctcatgaaagctccacttcccctgtg
ttaaatggagatcaagcttctactgtgtacaaaacggaaactcagaccggggttcataca
gagacaatagtgaaatcacagagtcagtcaatttcaaaatcagagaagcaaacaattgcg
gctaaagcaccaagagccctgaaattgaacactaatacaactgggtttagtcggcaattc
agtgatgaacttggaacaccaactgaaatcacaaacatagtgagaatgatagaagaaaat
attgatgaagttgatgaagaggatgttgaaaggactgcagacatgctgtttagaaaggag
gctatgcatcacagtaaaccgtcgcctccagcaggaaaactctttctcaatcttcctgta
cgaactcctgcaagcgatccccctcagtcttcatctggcagttcacacgaagaggatccc
atgccatcatatgccagagctgtacgacaacagttgccatcctatagggagacagacttt
gacccatcaatgttagagccccagacacccatgacacctgctgggtttcatactccggga
acagatatcaacactgaccctctagaactcctgcgtaatctcaatatcaataatgataac
ttaaataggagtgcccatggtcacttctga
DBGET
integrated database retrieval system
