Mercenaria mercenaria (northern quahog): 123566424
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Entry
123566424 CDS
T07835
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1-like isoform X4
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmer03021
]
123566424
03036 Chromosome and associated proteins [BR:
mmer03036
]
123566424
Transcription machinery [BR:
mmer03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
123566424
Chromosome and associated proteins [BR:
mmer03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
123566424
SLIK complex
123566424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CDH1_2_SANT_HL1
HTH_CHD1_Hrp3
Chromo
CHD1-like_C
Helicase_C
ResIII
HDA2-3
DEAD
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
123566424
NCBI-ProteinID:
XP_045216418
LinkDB
All DBs
Position
8:complement(47365939..47429487)
Genome browser
AA seq
1866 aa
AA seq
DB search
MSKTIDNLDITKLDFNKPLFDLSTTSSLPSTDYQTDENYKYTPPKRKLKDEDGDDNDKSE
DSESGSGSNNSSGSGSGSESESASENSEDGSENSGSEEKSGSGSNDSSNNDDERRKEDQK
SDQQASAMDTDSQDSSPKKKSRGRPRKGVLDDLKEGRDLFGRSMSKDSKFWQEDPDLYGV
RRSSRTRQEPTRYTIGQSDSDEEPRRRRRRRNSQRKNSDEWNSDSSENSSASSVERFKPR
RQPPTRSKRGRPGRPGRPSKQQVRSVGRPRKKLSSDEDDFSDSDDDYTKSSKTYNKRSAA
QKVRGKGRAGASTSRVNATRRGVANKNVSYKEEDSGATDSDDIIEAPEGEDEEKEKEEEN
KESIEKILDHRLGKKGASGERTTIYNIEENGDLNLSLPEDTPKEIQFFIKWKNWAHIHNT
WESEENLRQMKINGIKRLDNYIKKMEEVDEWKKFASPEDIEYFDIQMEFNEDLYKNCLLV
EKIISHSNQKTTNEQNGFPDYLCKWNGLPYSECTWEDGDLLSRKFQDMIDEYYQRNKSQK
IPTKLSKVLKYRPKYLPLKNQPGFIGGEEELTLRDYQLDGVNWLMHSWSKDNSIILADEM
GLGKTIQTIGFLAILHNTYQLYGPFLIVVPLSTVVAWQREFQNWCPEMNVIIYLGDVNSR
NLIREYEWCHPGNKRLKFNVLVTTYEILLKDKSFLGAVSWAELIVDEAHRLKNTDSLLYR
TLMDFKSNHRLLITGTPLQNSLKELWALLHFIMPEKFPKWSDFEEKHSRADKTGFALLHK
QLEAFLIRRVKKDVEKSLPAKTEQILRVEMSSVQRQYYKWILTKNYKELNKGLKGSCSSF
VNIIMELKKCCNHAFLVRPPENEPSQNDHLQTLIRGSGKLILLDKLLLRLREKGHRVLIF
SQMVRLLDIVSEYLQLRHFQYQRLDGSIRGDLRKSALDHFNAEGSQDFCFLLSTRAGGLG
VNLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVSVYRLVTKNSVEEEIVERAKRKM
VLDHLVIQRMDTTGRTVLNKENDLSSSRKIPFSKHELNSILKFGAEELFKEENDDEEPQV
DIDEILEQAETREMDENKGVGDELLSQFKIVTFENLEDEEIETPGKDWDKIIPKGDIDRV
EEEERQRALLELNLPPRQRTTIQQLEKSLGSDDEDKNNEEDSDSSDSGSDDDRPKKRGRP
RAGKNDNIKGFTNAEIRRFIKSYKKYGDPLSRLDDIACDAELQEKSESDLRKMAELLKSS
CEQALKEFNAKKQEQEAPEGTVNKKGPRGISCKIASVVVNVQSILKANGELEPLVRYIPK
TKTERKKFRIDFHAKMVHWDCSWDVEEDSNLLKGIYDYGMGNWEQIKMDQELGLYDKILP
DGDKKPQVKQLQTRADYLLRMLKRHLDGGGGNKPVGRGRKKKVKSKAEVDDNMDDSDSSA
KSAHDNNTSVPDSSKKLGKKTDKSDKDAKKSDTDHHEHHHHHHHHRHRTDKKKKKDDRKK
KPKENKAGPMHFTASAEPVAISQDGEFDGELPEEVFVECKEKMRPVKRSLKRLDNPEEGL
SDRDQVIHTRQCLLKIGDRINECLADMNDPEKIKQWRFYLWIFVSKFTEFDAKKLHKLYK
HALKKRDDERKDENSHQSKSHHDKHHKRSHEESKSNSYNTKRPHIEQDSSSNSNWTQATS
TTSHSSHVTSFRNAFNNTNTSTSSPSDRWQRSSPLDRHSQETQNTYSRNRYEGNNSSYSR
GSSGQYPHHEHSRYSDHKPHYGGDNRGFNDRRDGHGSYNHRDFPPNSYAQQHTYRDGRSG
DYRKFNPYREYGGQARSDTTNNNSYSHPPERKRRSDFNYDRDPRFRKEQRLDDYHGDSGY
SGPERH
NT seq
5601 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagacaatagacaacttagacattacaaaacttgattttaacaagccattgttt
gatctgagcacaacatcatccctgccatcgacagattatcagactgatgagaactacaag
tatacgccacccaagaggaaactgaaggatgaagatggtgatgacaatgataaatcagag
gattccgagtcaggatctgggtcaaacaattctagtggctcggggtccgggtcggagtct
gaatctgcatcggaaaattctgaagatggctcagagaattccggtagtgaagagaaatct
ggaagtggttctaatgactcctcaaataatgatgatgaaaggcgaaaagaggaccagaaa
tcagaccaacaagctagcgctatggacacggactcacaggatagtagcccaaagaaaaaa
tcgcgtgggcgtccaagaaaaggtgtcctggatgatttaaaagagggtagagatttgttt
ggaaggagcatgtccaaagattcaaagttttggcaagaagatccagacttgtacggagta
agacgatctagtcgcaccagacaggagcctacaagatataccattgggcagagtgatagt
gatgaagagccaagacgacggcgaagaaggagaaacagtcagaggaaaaattctgatgaa
tggaacagtgacagtagtgagaatagctcagcaagctctgtagaaagatttaaacctcgc
aggcaaccacctacaagatctaagagaggccgaccaggaagacccggccgccctagtaag
caacaagttcgatctgtgggccgtccaagaaaaaagttgtcctcggatgaagatgatttc
tctgacagtgatgatgactacactaaaagttccaagacgtataacaaaaggtcggcagca
cagaaagtcaggggtaaaggtcgagcaggcgccagtacctcaagggttaatgccacccga
cgaggggtcgctaacaaaaatgttagttacaaagaagaagacagtggtgcaactgactct
gacgacattattgaagcaccagaaggtgaagacgaagaaaaggaaaaagaggaagaaaac
aaagagagtatagaaaaaattcttgatcatagactagggaaaaagggagcctctggagag
agaactactatatataatattgaggaaaatggtgacttaaatctcagtctgcctgaggac
acgccaaaagagatccagttcttcattaaatggaaaaactgggcacatatacataataca
tgggagtcggaggagaatcttcgacagatgaagatcaatggaataaagaggcttgacaac
tatattaagaaaatggaggaggtagatgaatggaagaagtttgcttccccggaggatatt
gagtattttgatatacaaatggaattcaacgaagacctctataagaactgtctccttgtt
gaaaaaattatatctcattcaaatcaaaaaacaactaatgagcagaatggattcccggat
tacctctgtaagtggaatggtttgccgtattccgaatgtacgtgggaagacggagacctt
ctgtctcgaaagttccaagacatgattgatgaatattaccaaaggaataagtctcaaaaa
atacccaccaaactttcaaaggttctgaagtaccgtccaaaatatctgccattaaaaaac
caaccgggattcatcggtggtgaggaagaacttacattaagagattatcagctggacggt
gtcaactggttaatgcattcatggtcaaaggacaacagcattattctagcagatgagatg
ggtttaggcaagacaattcagactataggtttcctagcaattctccacaacacctaccag
ttatatggaccattccttattgttgtgccactatctacagttgtagcttggcagagagag
tttcagaactggtgtccagaaatgaatgtcataatctatcttggggatgtcaacagcaga
aatttgattcgtgagtatgaatggtgtcaccctggaaacaagaggttaaaatttaatgtg
ctggtcaccacatatgaaatccttttgaaagataagtcattccttggtgctgtgagctgg
gcggaactgatagtggatgaggcacatcgacttaaaaacaccgattcattactatacaga
acattgatggattttaagtcaaaccatcgcctacttatcactggtactccactacagaac
tccttgaaggaactttgggctttgctgcacttcattatgcctgaaaagtttccaaagtgg
tcagactttgaagaaaagcattctcgtgcagacaagacaggttttgctttacttcacaag
caattagaggccttcttgataagaagagtgaaaaaagatgtggaaaaatcacttcctgct
aagactgagcaaatcctgcgtgtagagatgtcctcggtacagagacagtattataaatgg
atattgacgaagaactacaaggagttgaacaaaggcttgaagggcagttgctcctccttt
gtaaacattataatggagttaaagaaatgttgtaatcatgcatttttggtccgccctccc
gagaacgagcccagtcagaatgaccacttacagacattgataagaggaagtggaaaatta
attctgctggacaagttgttgcttaggttacgtgagaaaggtcatagagtgctaatcttc
tctcagatggttcgtctccttgatattgtctcggaatatctccagctgagacattttcaa
taccagaggcttgatggttccattcgtggagatttaagaaagtctgcattggatcatttc
aatgctgaaggatctcaggatttttgttttttgctctctacgagggctggtggtttaggt
gtgaatcttgccactgctgatactgtgataatatttgatagtgactggaatcctcagaat
gatctgcaggcacaggccagagcacacaggataggacagaaaaatcaggtgtctgtgtat
cgtttagtcacaaagaatagtgtagaggaggagatagtggagagagccaaacgtaaaatg
gtgctggaccaccttgttattcaacgcatggacacaacaggacgtactgtactcaataaa
gaaaatgatctttcaagtagtaggaagataccattcagcaagcacgagttgaactccata
cttaaatttggtgctgaagaattgtttaaggaagaaaatgatgatgaagaaccacaggtt
gatatagatgagatattggaacaagcagagacaagagaaatggacgagaataagggtgtt
ggggatgaacttctgtcacagttcaaaattgtcacctttgaaaacctagaggatgaagaa
attgaaactccaggtaaagactgggacaagatcatcccaaagggagacattgatcgtgta
gaggaggaggagagacagagggcattattggaactgaatctcccacctagacagagaacc
acaatacaacagctggagaaaagtctggggtctgatgatgaagacaagaacaatgaagaa
gattctgacagttctgattctgggagtgatgatgatcgacctaagaaacgtggacgtcca
cgggccggcaagaatgataatatcaaggggtttacaaatgctgaaataagacgttttatt
aaaagttacaagaaatatggagatccactctcaaggttggatgatattgcttgtgatgca
gagcttcaagagaagtcggaatctgatctcagaaaaatggcagaattgctcaagtcttct
tgtgaacaagctctcaaagaatttaatgccaaaaaacaggaacaggaagccccagaagga
actgtaaacaagaaaggtccacgaggaatctcatgtaaaatagcaagtgttgttgtcaat
gtccagtccatattaaaagccaatggagagcttgagcccttagtcagatatataccgaaa
actaaaacagaacgtaaaaagtttcgaatagatttccatgcgaaaatggtacactgggat
tgtagctgggatgtggaggaagattccaaccttctcaagggtatatatgattatggtatg
ggaaattgggaacaaatcaagatggaccaagagcttggcttatatgataagattttacca
gatggtgacaagaagccgcaagtaaaacagttgcagacgcgagcagattatctcctcagg
atgttgaagagacatttagatggtggtggagggaataaacctgtcggacgaggcagaaaa
aagaaagtgaaatcaaaagcagaagtggatgataatatggatgactcagattctagtgca
aaaagtgcacatgacaacaatacaagtgttcctgattctagtaaaaagcttggtaaaaaa
actgacaaaagtgataaagacgctaaaaagtcagatactgatcatcatgaacatcatcat
caccatcatcatcatcgtcatcggacagataaaaagaagaagaaagatgatagaaagaag
aaaccaaaagaaaataaagccggtccaatgcattttacggcgagtgctgaaccagtggcg
atctcacaggatggcgaattcgatggtgaacttcctgaagaagtttttgtggagtgtaag
gagaagatgcgaccagtgaagcgttcactgaaacgtcttgataatcccgaggaaggtttg
tcagaccgtgatcaggtcatccatacacgacagtgtctgctcaagattggtgacaggatc
aatgaatgtctagctgacatgaacgatcctgagaagatcaaacaatggcgcttttattta
tggatatttgtgtccaagttcacagaatttgatgcaaagaaattacacaaattgtataag
catgcattaaagaaaagagatgatgaaagaaaagatgagaattcccatcagtcaaaatca
caccatgataaacaccacaaaaggtctcatgaagaatccaaatccaactcgtacaacaca
aaaaggcctcatatagaacaagacagttccagtaacagtaattggacccaggcaacctcc
accacgtctcactcgtcacatgtaacctcattccgtaatgcgtttaacaacacaaacacc
agtacgtccagtccgtcagatagatggcagagatctagtcccctagatagacattcacag
gaaactcaaaatacatacagtagaaatagatatgaaggaaataacagctcatattcacga
gggagttctggacagtacccccatcatgaacattcacgttactctgatcacaaacctcac
tatggaggtgacaatagagggtttaatgatagacgtgatggtcatggcagttacaatcac
cgtgattttcctcccaattcttatgcccaacagcatacttatcgggacgggagaagtggg
gactacagaaaatttaacccctatagagaatatggagggcaggctcggtctgacactacc
aataataacagctattcacatccaccagagcgtaaaagacgcagtgatttcaattacgat
agagatccaagatttcgtaaagaacagagacttgatgactatcacggtgatagtgggtat
agtggaccagaacgtcactga
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integrated database retrieval system
