Mercenaria mercenaria (northern quahog): 123566648
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Entry
123566648 CDS
T07835
Name
(RefSeq) DNA mismatch repair protein Msh6-like isoform X2
KO
K08737
DNA mismatch repair protein MSH6
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
123566648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmer03400
]
123566648
DNA repair and recombination proteins [BR:
mmer03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
123566648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
MUM1-like_PWWP
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
123566648
NCBI-ProteinID:
XP_045216870
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Position
8:complement(31711813..31775161)
Genome browser
AA seq
1354 aa
AA seq
DB search
MGPKATPAKQKNTLFSYFAKGSTPKECDRSSGDVLAPKKSPNKTKLVSDSVSQKAYEVGD
LLWCKLEGYPWWPSLICNHPTQNTHFKGGKNPQVHVQFFDNPVSRAWIKLKNCHEYKGSE
DAQVQKGGMFHTNSAPVVKGAEAADEAMKLSREDRLGLVVELQPSDEEDEMDLDPEIFDD
EMSDEDNSKENMDIGEEKVKKTPRKSPAKGRRSQRNRAKRRRIIVEDDEDSEAHDSGDEF
KPDAEEGSDDDDDASSGVDEDDVSSDDASEPDSPMKLPQKRKRPAPKPAWGPKSARKSAP
KSVQKALSGFSKDNSPDKSPPKGSSLKSEVASPKVSDVTKSKLAAFSASDSVGQNGDSAE
DKIVYQHCKYEWLQPDKIKDGNKRLKTDEGYDPRTLYIPESEKSKFTPAMRQWWEIKSHH
FDTVLFFKMGKFYELFHMDATIAVNELGLIYMKGDYAHSGFPEIAYGRYADTLVQRGYKV
ARIEQTETPDMMNERCKNLSKPSKFDKVVKREVCRITTKGTKTFSFLSGECADSQSTYLM
AIAEKEMEADSCSTYGVCFVDTSIGKFHIGQFLDDRHSSRLRTLLAHYPPVQILYEKGHL
SPRTLQVINNNLTSVMKEALTPKTEFWESSKTLRVLSEETYFKQEESSDVEWPEVLKAMM
ADSDALGRTASEEYSLAVSSLGALTWYLQYSLLDEELLSMKTFEKYEPLDNLKTADKSCK
TSFDFGTKHMVLDGVSLSNLDVTENSSSGTLEGTLLERLDQCYTPFGKRLFRQWLCAPLC
NPASINDRLDAVEDLIGCQDVVAEVVEKMKKLPDLERLLSRIHTLGTAKSKKHPDGRAIL
YEEVTYSKRKIEDFLATLDGFKVAAKIAQKFGNAVANFKAQLLSKTLGIEGKSEGGLFPD
LADELKFFDHAFDHNKAKKDGVIVPSKGVDPDYDKATRDIESTQSSLQQYLDKQKTRLGC
RSIVYWGTGKNRYQMEIPESAVRNVPNEFQLMSSKKGAKRFRTTDIEEMLAELVDAEERK
DAALKDVMRRIFHNFDKRYKMWDTAVQCMSVLDVLLSMAQYSRCADGVVCRPEIVVPDDD
QQPFLEIRDARHPCVCRTFTGGDFIPNDTVIGIKDENENDADDGHGNSQVVLVTGPNMGG
KSTLMRQVGLVVIMAQMGCYVPAEKCRLTPVDRVFTRLGASDRIMAGESTFFVELSETSA
ILQHATRHSLVLVDELGRGTATYDGTAIACAVVQELSRNVTCRTLFSTHYHSLVEEFSHD
PNIRLGHMACMVENEDEEDPTQETITFLYKFTSGACPKSYGFNAARLANLPEEVIKVAVQ
KAKEFESSVDTIRCFRNLWKDSTKEKLQAIQTPA
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atgggacccaaagcaacccccgcaaagcaaaagaacactctgttttcatacttcgccaaa
ggttccactccgaaagaatgtgatcggagttcaggcgatgtgcttgcacccaagaaatct
ccaaacaaaacgaaactggtgtcggattcagtgtcacagaaggcatatgaagttggtgat
ttgctgtggtgtaaactagaggggtatccatggtggccgagcctcatctgtaaccatcct
actcagaacactcatttcaaaggtggtaaaaatccacaagtacatgtacagttctttgac
aatcctgtctctagagcctggatcaaactaaagaattgtcatgaatacaagggatcagag
gatgcacaggttcagaaaggtggaatgttccacaccaacagtgcgccggttgttaagggt
gcagaggcagctgatgaagctatgaaactctcccgagaagatcgtcttggacttgttgta
gagctacagccttcagatgaagaggatgaaatggatctagatccagaaatatttgatgat
gaaatgagcgatgaagataacagcaaagagaacatggatataggggaagagaaggtgaag
aaaacaccacgcaagtcgcccgctaaaggtagaaggtcacaaagaaaccgtgccaagagg
cggagaatcattgtagaggatgatgaagatagtgaagcacacgactcgggtgatgaattt
aagccagatgctgaggaagggagtgatgacgatgatgatgctagcagtggtgttgatgaa
gatgatgtttcatcagatgatgcttctgaaccagattctccaatgaagctacctcagaag
cgaaaaagaccagcaccaaaacctgcatggggaccaaagtctgcaagaaaatctgcacca
aagtcggttcagaaagcattgtcaggcttctctaaagataacagtccggataaatcccca
ccaaaaggcagcagtttaaaatcggaagtggcatctccaaaagttagtgatgttacgaaa
tcaaagcttgccgcattctcagcaagtgactctgttggacagaatggtgacagtgcagaa
gacaaaatagtttaccagcactgtaaatatgaatggttacaaccagataaaatcaaagat
ggcaataagcgtttgaagacagatgagggatatgatcctagaacattgtatatacccgaa
agtgagaagtctaaattcacacctgcaatgaggcagtggtgggagataaagtcacaccat
tttgatactgtgttatttttcaagatgggaaaattttatgagttgtttcacatggatgcc
acaatagctgtcaatgaacttggacttatttacatgaagggtgattatgctcattcagga
tttccagagattgcgtatggacgttacgcagacacgttggtacagcgagggtataaagtt
gccagaatagaacaaaccgagacaccggatatgatgaatgagaggtgtaaaaatttgagc
aagccgagcaagtttgataaagttgtaaaacgagaggtgtgtaggataacaacaaagggg
actaaaactttcagcttcctgtcaggagaatgtgctgactcacagagtacatatctaatg
gctattgcagagaaggagatggaagctgacagttgcagtacttatggtgtctgttttgtt
gatacatcgatagggaaatttcatataggccagtttctggatgacaggcatagttctaga
ttacgaacactgcttgcacactacccaccagtccagatactttacgagaaaggtcatctg
tctcctcgcacgctacaagtgattaacaacaatttaacatctgtgatgaaagaagcattg
acaccaaaaactgaattctgggaaagtagtaaaacgctgcgtgttttatctgaagaaact
tatttcaagcaagaggaaagtagcgatgtggagtggccagaggttctgaaagctatgatg
gctgatagtgatgcccttggtcgtacagcatcagaagaatacagtctggctgtcagctca
ctaggagctctcacttggtatttacagtactctctcttagacgaggaattgctgtccatg
aaaacctttgaaaaatatgagccactggataaccttaaaacagctgacaaatcttgcaaa
accagttttgactttggtacaaaacatatggttttagatggagtatcattgtctaatttg
gacgtgacagaaaacagcagttcaggcacgttagagggcactctcctggaacgactggac
cagtgctacactccatttgggaagcgtttgttcaggcagtggttatgtgctccgctctgt
aatccagcatcaatcaatgacagactggatgctgttgaagatctgattggttgtcaggat
gtggtcgctgaagttgttgaaaaaatgaaaaaattacctgacctggaaagattattaagc
aggattcacacacttggtacagcaaagagcaaaaagcatcctgatggtagagctatattg
tacgaggaggtcacatacagtaaaaggaagatagaagacttcttggcaaccttagatggt
tttaaagtggctgcaaaaatagcacagaaattcgggaatgccgtggcaaacttcaaagca
caacttctttcaaaaactttgggcatcgaaggaaaaagtgaaggtggcttatttccagat
ctagctgatgaactgaagttctttgatcatgcttttgatcacaacaaggcaaagaaagat
ggagtcattgtacccagtaaaggagtagatccagattatgataaagccactcgagatata
gaatcaacacagagtagtctacagcagtatctcgataaacaaaaaactaggttaggatgt
aggtcgatagtatactggggaacaggaaagaatcgttaccagatggaaattccagagagt
gcagtacggaatgtgccaaatgagtttcagctgatgtcatcaaagaagggagctaaaagg
ttcagaacaactgatatagaagagatgttagcggaactggttgatgctgaggaaaggaaa
gacgcagcactgaaggatgtgatgagaagaatttttcataattttgataaacggtataaa
atgtgggatactgcagtgcagtgtatgtccgtgttggatgtgttattgtcgatggctcag
tacagtcggtgtgctgatggagtggtttgcaggccagagatagttgtaccagatgatgac
caacagcccttccttgagatacgcgatgcgagacatccttgtgtttgccggacctttact
ggaggcgattttatacctaatgatacagtcataggaataaaagatgaaaatgaaaatgac
gctgatgacggccatgggaacagtcaggttgtcttggtaacaggaccaaacatgggaggt
aaatctacattgatgagacaagttggcttggtggttattatggcacagatgggttgttat
gtaccagcagagaagtgtaggttaacaccagtagacagggtatttacacggcttggtgcc
agtgacagaatcatggctggtgagagcacattctttgtagaactcagtgagacgtcagcc
atacttcaacatgcaacacggcattctcttgtccttgtagatgaacttggacgaggtact
gcgacttatgatggtacagctatagcctgtgcagtagttcaggaactgtcgaggaatgtc
acatgtagaactttgttctccacacactaccacagtctcgttgaggaattctcacatgac
ccaaacattcggctcggacatatggcatgtatggttgagaatgaggatgaagaggacccc
acacaggagacgatcacatttctgtacaagttcacctcaggggcgtgtcctaaaagttat
ggtttcaatgctgccaggctggctaatctaccagaagaggtgatcaaagtggctgttcaa
aaagcaaaggagtttgaatcttcagtggatactattaggtgcttcaggaacttgtggaaa
gacagcacaaaagagaaactccaggccatacagacacctgcgtga
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