Mercenaria mercenaria (northern quahog): 128554402
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Entry
128554402 CDS
T07835
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128554402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmer03021
]
128554402
03041 Spliceosome [BR:
mmer03041
]
128554402
03036 Chromosome and associated proteins [BR:
mmer03036
]
128554402
Transcription machinery [BR:
mmer03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
128554402
Spliceosome [BR:
mmer03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
128554402
Complex B
128554402
Complex C
U2 SnRNP specific factors
128554402
Chromosome and associated proteins [BR:
mmer03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
128554402
TFTC complex
128554402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
128554402
NCBI-ProteinID:
XP_053391658
LinkDB
All DBs
Position
Unknown
AA seq
1216 aa
AA seq
DB search
MHLYNLTLQRATGITCAVHGNFSGSKLQEVIVARGKILELLRHDPNTGKIYPVLTQEVFG
IIRSLMPFRLTGGTKDYLVVGSDSGRIVILEFLAQKNMFEKVHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAVEKQKLVYILNRDAQARLTISSPLEAHKANTLVFYSVGVDVGFENP
TFACLEIDYEECDADPTGEAADKAQQLLTYYELDLGLNHVVRKYSEPLEEHANFLISVPG
GTDGPSGCLICSENYITYKNLGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIHLKYFDTIPVAASLCVLKSGFLFSASEFGNHNLYQ
IARLGDDDDEPRFSSASPLEEGTTFFFSPRPLKNLVMVDEMDSLSPITSCQIADLANEDT
PQLYTLCGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVKKHSDDDYDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSQLGEDALVQIYPDGIRHIRSDKRVNEWKTPG
KKNIVKCAVNQRQVVIALSGGELVYFEMDPTGQLNEYTERKEMSSDVVCMALGRVPSGEQ
RCRFLAVGLADNTVRIVSLDPSDCLSPLSMQALPAAPESLCIVEMGGTEAKEETGEAGTA
GGLFLNTGLQNGVLLRTVLDTVTGDLSDTRTRYLGSRPVKLFRIAMQGSEAVLAMSSRSW
LSYAYQSRFHLTPLSYESLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVSHS
LQYTPRKFVIHPESGHLIIIETDHNAYTEATKAQRKQTLADAMIEDAHEDERELAAEMAA
AFLNEELPEAVFGAPKASAGMWASIIRVINPITGTTLDSINLEQNEAAHCLSIVKFSNSP
EETHVVVGVAKDLTLNPRTLGNGFLYTYKLIEGERLEFLHKTVVDEMPGAIAPFQGRALI
GIGKFLRIYDLGKKKLLRKCENKHIPNFVVGIHTMGNRVVVADIQESFHFVRYKRAENQL
IVFSDDTNPRWITTSCLLDYDTVAGADKFGNITVIRLPQDVTDDVDEDPTGNKALWDRGL
LNGASQKADILINFYIGEVVTSLQKATLIPGGSESLVYTTLSGGIGMLVPFTSHEDQDFF
QHLEMYMRQEHPPLCGREHLSYRSYFFPVKNVVDGDLCELFPSMDVAKQKSVAEELDRTP
AEVSKKLEDIRTRYAF
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgtacaaccttacgcttcagagggccacgggaattacatgtgctgtacatggg
aacttctccggctccaagttacaggaagtgatagttgctcgaggaaagattcttgagctg
ctcaggcatgatccgaacacagggaagatatatcctgttcttacacaggaggtgtttgga
attatcagatctctaatgccatttagattaactggaggaaccaaagattaccttgttgtg
ggttccgactctggtagaattgtcatcctggagttcctagcacagaagaacatgtttgag
aaggtacaccaggagacattcggcaaaagtggatgtagacgtatagttccaggccagttc
ctagctgtggatcctaaaggcagagctgttatgataggtgcggtggagaaacagaagttg
gtatatatactgaacagagatgcacaggccagactgactatatcctcgcctcttgaagct
cataaagcaaacacccttgtcttctacagtgtaggcgtagatgtcggctttgaaaaccct
acctttgcttgcttagaaattgattatgaggaatgtgatgcagaccctactggagaggcg
gcggacaaggcacaacaacttcttacatattacgagctggatctagggctgaaccatgta
gttagaaaatactctgaacctcttgaagaacatgcaaacttcttgatatctgttcctgga
ggtacagatggacccagtggttgtctgatatgctctgagaactacattacatacaaaaat
ctgggtgaccaaccagatatcaggtgtcctattccacgcaggcggaatgatctggatgac
cctgaaagaggcatgatatttgtttgcagtgctacacataaaacaaagtcaatgtttttc
ttcctggcacaaacagaacagggtgacattttcaagattaccttggaaacggacgaagat
atggtgacagaaatacacctcaagtactttgatacaataccagtggctgcaagcttatgc
gtgttaaagtcaggcttcctgttttctgcctcggaatttggaaatcacaatctgtaccag
atagctaggttaggggatgacgacgacgagccacggttcagtagtgccagtccgctagag
gaaggcaccacattcttcttctctcctcgaccactgaaaaatctggtcatggttgatgag
atggacagtttgtcaccaataacctcgtgccagatagcagatttggccaatgaggacaca
cctcagttgtatacattatgtggcaggggtcctagatcttccttgagagttctcagacat
ggtctcgaggtatctgaaatggccgtgtcagaactgcccggtaatcccaatgctgtatgg
actgtgaaaaaacactctgatgatgactatgatgcttacattattgtgtccttcgttaac
gctacactggtactgtctatcggagagactgtagaggaagtgacagactcgggatttctg
ggtacaacaccaacactgtcatgttctcaacttggggaagatgctctagtccagatttat
ccagatggcattcgtcatatccgatcagacaagagagttaatgaatggaaaacacctggc
aagaagaatattgtaaagtgtgctgtgaaccagagacaggttgtcatagcactgtctggt
ggtgagcttgtctactttgaaatggacccaacaggacaactgaatgaatatacagaaagg
aaggagatgtcatcagatgttgtatgtatggcactaggacgagtaccatcaggagagcaa
agatgtcggttcctggctgtcgggcttgctgacaatactgtcagaattgtctcccttgat
ccctctgattgtttgtccccactaagtatgcaggctctaccagcagctccggagtcgctg
tgtattgtagagatgggaggtacagaggctaaggaggagaccggggaggctggcacagcc
ggaggattgtttcttaatacaggcttacagaatggtgtattgttgcgtacagtgctggac
actgttacaggagatttgtctgatacgagaaccagataccttggttcaagacctgttaaa
cttttcaggattgccatgcagggctctgaggcagtgctagccatgtcaagtcgatcatgg
ttgagttacgcctatcaaagcagatttcatttgacaccactgtcatacgagagcttggaa
tatgcctcgggctttgcctcagaacagtgtccagagggtatcgtagccatctctacaaat
actctcaggattttggcgttagagaagttgggagcagtgtttaatcaagtatctcacagt
ttgcaatacacaccgcgcaagtttgtcatacacccagagtctgggcatctcatcatcata
gagactgatcacaatgcatacactgaggctaccaaagcacagagaaaacaaactcttgct
gacgcaatgatagaagatgctcatgaagatgaacgggagttggcagcagaaatggctgca
gcatttctaaacgaggaattgccagaagccgtgttcggagcaccgaaagcaagtgctggc
atgtgggcctccattatcagggtgattaatccaattactggaacaaccctagactccata
aatcttgaacagaatgaagcagcccactgcttatcaatagtgaaattctccaactcccca
gaggaaacacatgttgttgttggtgttgcaaaagatttaacattaaaccctcgcacattg
ggaaatggatttttatacacatataaactgatagaaggtgaaagacttgagttcttgcat
aaaactgttgttgatgaaatgccaggagccattgcaccattccaaggcagggctctgatt
ggaattgggaaattcttgaggatatatgatctcggcaaaaagaagctgttaagaaaatgt
gaaaataagcatattcctaactttgttgtgggtatccatacgatgggtaacagagtggtg
gttgccgacatacaggagagctttcactttgtcagatataagcgggccgagaaccagctg
attgtgttttctgacgatacgaaccctcggtggatcacaacatcttgcttgttagattat
gatactgtggcaggagcagacaagtttggaaacattacagtaattcgattgcctcaagat
gttactgatgatgttgatgaggatccaactgggaacaaagcattgtgggatagaggttta
ctcaatggggcttcacaaaaggctgatatattgattaatttctacattggtgaggttgtc
acatcactacaaaaggccactttaatacctggtgggtcagaatctctcgtttatacaaca
ttgtctggtggtataggcatgctcgtacccttcacatctcatgaggaccaagatttcttc
caacatttggagatgtacatgagacaggaacaccccccactgtgtggccgagagcatctt
tcatatagatcttacttctttcctgtcaagaatgttgtggatggggacctgtgtgaattg
tttccgtcaatggatgttgccaaacagaaaagtgtcgctgaggaacttgacagaacacct
gccgaagtttcgaaaaaattggaagatatcaggacaagatacgctttctaa
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integrated database retrieval system
