Methylobacterium mesophilicum: MMSR116_09960
Help
Entry
MMSR116_09960 CDS
T06344
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mmes
Methylobacterium mesophilicum
Pathway
mmes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMSR116_09960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmes03019
]
MMSR116_09960
03009 Ribosome biogenesis [BR:
mmes03009
]
MMSR116_09960
Enzymes [BR:
mmes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MMSR116_09960
Messenger RNA biogenesis [BR:
mmes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MMSR116_09960
Ribosome biogenesis [BR:
mmes03009
]
Prokaryotic type
rRNA processing factors
MMSR116_09960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QGY02166
UniProt:
A0A6B9FKA5
LinkDB
All DBs
Position
complement(2079865..2082966)
Genome browser
AA seq
1033 aa
AA seq
DB search
MANKMLIDAMHPEETRVVTVHGSRVEEFDFEAANRRQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFNEIHPDYYQIPLADRQALLEEEARDAEEHREREERRRRSPRRSRGRRAE
ARARSTDETVSAEDTFEDTTDALQVDVQAADQAPEEAAVAPTGMPDTLAENPEAVQEALA
SETAAADIAEPQAESAPAGEAVHEAAPEAGNPAPTEAQPAHAATDQDSPAEPEARIAVAE
ALTVAEEPAEAVAEDTADASGLTAAPVGEADDLSDEEDEESDEEDEDEDESEDDEDESDE
DSDEESDDPDAEPKIAQVGGNGDALAEIPERPRHYRRQYKIQEVIKRRQIILVQVVKEER
GTKGAALTTYLSLAGRYSVLMPNTGRGGGISRKITSAADRKRLKEVVQDLEVPEGMGVIL
RTAGASRSKPEIARDFEYLMRLWESVRELTLTSMAPALVYEEGSLIKRAIRDLYNKDLDE
VLVAGEDAYREAKDFMRMLMPGQSKVVKPYRDPTPIFARFGVEQQLDAMFSTHVSLKSGG
YLVINPTEALVSIDVNSGRATREHDIEDTALKTNLEAAEEVSRQLRLRDLAGLIVIDFID
MEEKRNNRAVEKKLNECLKNDRARIQVGRISPFGLLEMSRQRIRTGVLESSSIPCAHCGG
SGFVRATASVALHILRSIEEALLKSASHNLVLRTRTEVALYILNQKRGHLRELEVRFGVT
ITIAADERLAATAAFQLDRGEPAQRAEGPVTGVRAQAISPTTEFDDEDEEVDEAEAEADV
EGEAEEGGAEAREDGSRDEGDGRRRRRRRRRRGGRQEGRSEDERQGGERPEEDDREDGRD
EDWEGEDAAEAGEPSEPAPVAAAEAREPDAAVAGPDESARAEDEGGRRRRRGRRGGRGRG
EGRTRDAAEAEDAPEATGDTVALSAEEPVSAQAVAEAVEAVPSEGRGETAVDRPVAAAPE
TSATGGADAAPDRAAARGAEPEPAQEAAGEAARELDLEPAPEPVAVVLTPPADPDRPKRA
GWWSRTKAALTGE
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaaaatgctgatcgacgcgatgcacccggaagagacccgggtcgtcacggtc
cacgggtctagggtcgaggagttcgacttcgaagccgccaaccggcgccagctgcgcggc
aacatctacctcgccaaggtcacccgcgtggagccgtcgctccaggcggccttcgtcgag
tacggcggcaaccgccacggcttcctggccttcaacgagatccaccccgactattaccag
atcccgctcgccgaccggcaggcgctcctcgaggaggaggcccgggacgccgaggagcac
cgcgagcgcgaggagcgccgccgccgctcgccccgccgctcccgcggccgccgcgccgaa
gcccgcgcccgcagcacggacgagacggtgagcgccgaggacacgttcgaggatacgacc
gacgcgctgcaggtcgacgtgcaggcggcggatcaggcccccgaggaagccgcggtcgcc
cccaccggcatgcccgacaccctcgccgagaatcccgaggcggtgcaggaggccctcgcc
tccgagaccgcggccgccgacatcgccgagccgcaggccgagtcggccccggccggcgaa
gcggtccacgaagcggcccccgaggccggcaaccccgcgccgaccgaggcgcagcccgcc
cacgccgccaccgaccaggacagcccggccgagcccgaggcccgcatcgccgtggcggag
gccctgaccgtggcggaggagcccgccgaggccgttgcggaggataccgcggacgcgtcc
ggactgaccgcggcgcccgtgggcgaggccgacgacctgtccgacgaggaggacgaggaa
tccgacgaggaggatgaggacgaggacgagtctgaggacgacgaggacgaatccgacgag
gactcggacgaggaatccgacgatcccgacgccgagcccaagatcgcccaggtcggcggc
aacggcgacgcgctggccgagatccccgagcgcccccgccactaccgccgccagtacaag
atccaggaggtgatcaagcgccgccagatcatcctggtgcaggtggtcaaggaggagcgc
ggcacgaagggcgcggcgctcaccacctacctgtcgctcgccggccgctactcggtgctg
atgcccaacaccggccggggcggcggcatctcccgcaagatcacctcggcggccgaccgc
aagcgcctcaaggaggtcgtgcaggatctggaggtgccggaggggatgggcgtcatcctg
cgcaccgccggcgcctcgcgctccaagcccgagatcgcccgggacttcgagtacctgatg
cgcctgtgggagtcggtccgcgagttgacgctgacctcgatggccccagcgctggtctac
gaggagggctcgctgatcaagcgggccatccgagacctctacaacaaggatctggacgag
gttctggtcgcgggcgaggacgcctaccgcgaggccaaggacttcatgcggatgctgatg
cccggccagtccaaggtcgtgaagccctaccgcgacccgacgccgatcttcgcccgcttc
ggcgtcgagcagcagctcgacgcgatgttctccacgcacgtctcgctgaagtccggcggc
tacctcgtgatcaacccgaccgaggctttggtctcgatcgacgtgaattcgggccgcgcg
acccgcgagcacgacatcgaggacaccgccctcaagacgaacctggaggccgccgaggag
gtctcccgccagctcaggctgcgcgacctcgcgggcctgatcgtcatcgatttcatcgac
atggaggagaagcgcaacaaccgcgccgtcgagaagaagcttaacgagtgcctgaagaac
gaccgcgcccgcatccaggtgggccggatctcgcccttcggcctcctggagatgagccgc
cagcgcatccgcacgggcgtccttgagtcctcctcgatcccctgcgcgcattgcggcggg
tccggcttcgtgcgcgccaccgcgtcggtggcgctccacatcctgcgctcgatcgaggag
gcgctgctcaagtcggcctcccacaacctcgtcctgcggacccgcaccgaggtggccctc
tacatcctcaaccagaagcgcggacacctgcgcgagctggaggtgcgcttcggcgtgacg
atcacgatcgcggccgacgagcggctcgccgccaccgccgccttccagctcgaccgcggc
gagccggcccagcgggccgagggcccggtgacgggcgtacgcgcccaggcgatctcgccc
accaccgagttcgacgacgaggacgaggaggtcgatgaggccgaggccgaggcggacgtc
gagggcgaggccgaagagggcggtgccgaggcccgcgaggacggatcccgcgacgagggc
gacggccgtcgtcggcgccgtcgccgccgccgccgcggcggccggcaagagggccgttcc
gaggacgagcgccagggcggcgagcgtccggaggaggacgaccgcgaggacggccgggac
gaggattgggagggcgaggacgcggccgaggccggggagccgtccgagcctgcgccggtc
gccgcggccgaagcccgggagcccgacgcggcggtggccgggccggacgagtccgcccgc
gccgaggacgagggcgggcgacgccgtcgccgcggacgccggggcggacgcgggcgcggc
gagggccgcacccgggatgcggccgaggcggaggatgcccccgaggcgacgggcgatacg
gtcgccctgtcggcggaggaaccggtgagcgcgcaggccgtggcggaagccgttgaggct
gtaccgtcggaaggccggggcgagaccgcggtcgatcgacccgtcgctgccgcgccggag
acatccgcgaccgggggtgccgacgcggcaccggaccgcgcggccgctcgcggggctgag
cccgagcctgcccaggaagcggccggtgaggcggcccgtgaacttgaccttgagccggcg
ccggagcccgtggcggttgtgctgacgccgcccgccgatccggaccggccgaagcgcgcc
ggatggtggtcccggacgaaggccgcgctcacgggcgagtga
DBGET
integrated database retrieval system
