Methylobacterium mesophilicum: MMSR116_24050
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Entry
MMSR116_24050 CDS
T06344
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mmes
Methylobacterium mesophilicum
Pathway
mmes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMSR116_24050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmes03019
]
MMSR116_24050
Messenger RNA biogenesis [BR:
mmes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MMSR116_24050
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QGY04640
UniProt:
A0A6B9FPY9
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All DBs
Position
5008882..5010555
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AA seq
557 aa
AA seq
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MATGQEELVFLPLGGVGEIGMNAALYGFGPEKGRKWIMVDCGMGFASEEKMPGIDLMYPD
LTFIEEKRKDLLGIFITHAHEDHIGAISELWSRLKAPVYATRFAKNLLETRRLSEAGAPK
VDLREVKPGRRVTVGPFELEYVPVSHSIPESNAIAIRTAAGLVVHTGDWKIDPTPVAGEV
TSPEAFTALGDEGILALVCDSTNVVREGFSPSEREVAATLKTLIAEAPHRVAVTTFASNV
ARIRAVAEAAVACGREIVAVGRAMDRVIDVARECGYLDGLPEFRRSDSWKSLPRERVVAL
LTGSQGEPRAALARVSRRDHPDISLTAGDRVIFSSRAIPGNERDVGAIINDLIEQGVEVI
TDRTALVHVSGHPRRDEMVEMYKWTRPGTAIPVHGEALHLDEHARFARAQGVQNVVKARN
GSLIRLSPGTPEVIDHVKAGRLFKDGDVLIDEKDRAIPERRKLMQAGLVSVAIAIDEDGV
VLGEPAVDIIGLPNRGRSGEPLIETVVDAVSRTLSGMSRGKLKDSESVEKTVDRAVRTAV
NEVWGKKPACHVQVVEV
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaggacaggaagagctcgtcttcctgccgctcggcggcgtgggcgagatcggg
atgaatgcggcgctctacggcttcgggccggagaagggccgcaagtggatcatggtcgat
tgcggcatgggcttcgccagcgaggagaagatgccgggcatcgacctgatgtacccggac
ctcaccttcatcgaggagaagcgcaaggacctgctcggaatcttcatcacccacgcccac
gaggaccatatcggagcgatctcggagctgtggtcgcggctcaaggcgccggtctacgcg
acccgcttcgccaagaacctgcttgagacccgccgcctgtccgaggccggcgccccgaag
gtggacctgcgcgaggtgaagcccggccggcgcgtgaccgtcggtccgttcgagctcgaa
tatgtgccggtctcgcactcgatcccagaatcgaacgccatcgcgatccgcaccgcggcc
ggcctcgtggttcataccggcgactggaagatcgacccgacgccggtggccggcgaggtc
acctcgcccgaggccttcacggcgctcggcgacgagggcatcctggcgctcgtctgcgat
tccaccaacgtggtccgcgagggcttttcccccagcgagcgcgaagttgcggcgaccctc
aagaccctgatcgccgaggcaccccaccgggtcgcggtgaccaccttcgcgtcgaacgtc
gcgcgcatccgggccgtcgccgaggcggcggtggcgtgcggccgcgagatcgtggcggtc
ggccgggccatggaccgggtgatcgacgtggcccgcgagtgtggctacctcgacggcctg
cctgagttccgccgctcggattcgtggaagagcctgcccagggagcgggtcgtggccctg
ctcaccggctcgcagggcgagccgcgggcggctctggcccgggtctcccgccgcgaccac
ccggacatcagcctgaccgcgggcgaccgggtgatcttctcctcgcgcgcgattcccggc
aacgagcgcgacgtcggcgcgatcatcaacgacctgatcgagcagggcgtcgaggtgatc
accgaccgcaccgccctggtccacgtctccggccacccgcgccgggacgagatggtcgag
atgtacaagtggacgcggcccggcaccgcgatcccggtccacggcgaggcgcttcacctc
gacgagcatgcccgcttcgcccgcgcgcaaggcgtgcagaacgtcgtgaaggcccgcaac
ggcagcctgatccgcctgagccccggcacgccggaggtgatcgaccacgtgaaggccggc
cgcctgttcaaggacggcgacgtcctgatcgacgagaaggaccgggcgatcccggagcgg
cggaagctgatgcaggcgggcctcgtctcggtggcgatcgccatcgacgaggacggcgtc
gtgctcggcgagccggcagtggacatcatcggcctgccgaaccggggacggtccggcgag
ccgctgatcgagaccgtggtggatgccgtgtcgcggaccctgtcggggatgtcgcggggc
aagctcaaggactcggagagcgtcgagaagacggtcgaccgggcggtgcgcaccgccgtc
aacgaggtctggggcaagaagcccgcctgccacgtgcaggttgtggaggtttag
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