Methylobacterium mesophilicum: MMSR116_25655
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Entry
MMSR116_25655 CDS
T06344
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mmes
Methylobacterium mesophilicum
Pathway
mmes03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmes00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MMSR116_25655 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmes03021
]
MMSR116_25655 (rpoC)
03400 DNA repair and recombination proteins [BR:
mmes03400
]
MMSR116_25655 (rpoC)
Enzymes [BR:
mmes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MMSR116_25655 (rpoC)
Transcription machinery [BR:
mmes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MMSR116_25655 (rpoC)
DNA repair and recombination proteins [BR:
mmes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MMSR116_25655 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
RnfC_N
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
QGY04905
UniProt:
A0A6B9FVM7
LinkDB
All DBs
Position
5354360..5358568
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNQQATPVSFDQIKISISSPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLARVRRDRMGHIELAAPVAHIWFLKS
LPSRIGLLLDMALKDLERILYFESYCVIEPGLTPLKERQLLTEEEYLRAQEEYGEDSFTA
MIGAEAIRRILQELDLDKIANDLREEIAVTTSELKPKKLLKRLKIIEAFQQSGNRPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYARLDAKGFSATVKQAKKLVEKEKPEVWDILDEVIRE
HPVMLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSIVAEGAPGEFKAGNAKNPMQGVYG
DMGELEHALAAKAVSLHSKIKWRWTGIGPDGEPLTKTYETTPGRVILSGALPKHRKVPFD
VVNKLMTKKEISAMIDTVYRHCGQKESVIFCDRIMALGFTHAFKAGISFGKDDMVVPENK
WSIVDTTRALVKDYEQQYNDGLITQGEKYNKVVDAWAKCSDKLAAEMMGRISAVQKDDKG
ADKQVNSIYMMSHSGARGSPAQMKQLAAMRGLMAKPSGEIIETPIISNFKEGLDVLEYFN
STHGARKGLADTALKTANSGYLTRRLVDVAQDAVIREVDCGTTSGIKMRAIVDAGQVVAT
LATRILGRATAEDLVAADGTVIVKTGETIEERHLPAINAAGIQEVKIRSVLVCATKSGVC
ATCYGRDLARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQIADSSFIESSFEG
TIKIRNRAIAKNTDGDLIATGRNVAVVIVGPDGVERAVHRLQYGAKLRVDEGDKIKRGQR
IAEWDPYTRPILTEVDGIVAYEDLVDGQSMTETTDESTGIAKRVVVDWRGSARTSDLKPA
MVVVDKDGKALKLPRGSDARYFLPVDAIIGFDPGATVKAGDILARVSTDSAKTRDITGGL
PRVAELFEARRPKDAAIIAEKSGTIAFGRDYKNKRRLTLTPHDGSEAVEYLIPKGKHIHL
QDGDVVELGDYIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVSINDKHIEVIVR
QMLQKVEVTDGGDSDILSGDQIDRTELTDFNEKLLAEGKKPIQGVPVLLGITKASLQTKS
FISAASFQETTRVLTEAAVNGKVDTLEGLKENVIVGSLIPAGTGSMVADIRAIARRRDAM
ILQQKQTESGAVPVEELPPAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaaccttttcaaccagcaggccacgccggtcagcttcgaccag
atcaagatctcgatctcgtccccggagaagatcctctcctggtcgtacggcgagatcaag
aagcccgagaccatcaactaccggaccttcaagcccgagcgcgacggcctgttctgtgcg
cgcatcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcgtcatctgcgagaagtgcggcgtcgaggtcaccctcgcgcgcgtccggcgc
gaccgcatgggccacatcgagctggccgcccccgtcgcccacatctggttcctgaagtcg
ctgccgagccgcatcggcctgctgctcgacatggcgctcaaggaccttgagcggatcctg
tacttcgagtcgtactgcgtcatcgagccgggcctcacccccctgaaggagcgtcagctc
ctgacggaggaggagtacctgcgcgcccaggaggagtacggcgaggactcgttcaccgcc
atgatcggcgccgaggccatccggcgcatcctgcaggaactcgacctcgacaagatcgcc
aacgatctgcgcgaggagatcgccgtcaccacctcggagctgaagcccaagaagctgctg
aagcgcctcaagatcatcgaggcgttccagcagtccggcaaccgccccgagtggatgatc
ctcacggtcgtgccggtgatcccgccggacctgcgcccgctggtcccgctcgacggcggc
cggttcgcaacctccgacctgaacgacctgtaccgccgcgtcatcaaccgtaacaaccgc
ctgaagcggctgatcgagctgcgcgcgcccgacatcatcatccgcaacgagaagcggatg
ctgcaggaggccgtcgacgcgctgttcgacaacggccgccgcggccgcgtcatcacgggt
gccaacaagcgcccgctgaagtcgctcgccgacatgctgaagggcaagcagggccggttc
cgccagaacctgctcggcaagcgcgtcgactactcgggccgctcggtcatcgtggtcggt
ccggagctgaagctgcaccagtgtggcttgcccaagaagatggcgctggagctgttcaag
ccgttcatctacgcgcgcctcgacgccaagggtttttccgcgaccgtcaagcaggccaag
aagctcgtcgagaaggagaagccggaggtttgggacatcctcgatgaggtgatccgcgag
cacccggtgatgctgaaccgcgcgccgacgctccaccgcctgggcatccaggcgttcgag
ccgaagctgatcgagggcaaggcgatccagctgcatccgctggtctgcgccgcgttcaac
gccgatttcgacggcgatcagatggccgtgcacgtgcccctgtcgctcgaggcgcagctg
gaagcgcgcgtcctcatgatgtcgaccaacaacatcctgcacccggccaacggtcagccg
atcatcgtgccgtcgcaggatatcgtgctcggcctctactacctgtcgatcgtggccgag
ggcgcgccgggcgagttcaaggccggcaacgccaagaacccgatgcagggcgtctacggc
gacatgggcgagctggagcatgccctggccgccaaggccgtgtcgctgcactcgaagatc
aagtggcgctggaccggcatcggcccggacggcgagcccctgaccaagacctacgagacc
accccgggccgggtgatcctgtccggcgccctgcccaagcaccggaaggtgcccttcgac
gtcgtcaacaagctgatgaccaagaaggagatctcggcgatgatcgacaccgtctaccgc
cactgcggtcagaaggagtcggtgatcttctgcgaccggatcatggcgctgggcttcacc
cacgcgttcaaggccggcatctcgttcggcaaggacgacatggtcgtgccggagaacaag
tggtcgatcgtggacacgacccgcgcgctcgtgaaggattacgagcagcagtacaacgac
ggcctgatcacccagggcgagaagtacaacaaggtcgtcgatgcctgggccaagtgctcg
gacaagctggccgccgagatgatgggccgcatctcggccgtccagaaggacgacaagggt
gcggacaagcaggtcaactcgatctacatgatgagccactcgggtgcccgtggctcgcct
gcccagatgaagcagctcgcggcgatgcgcggcctcatggccaagccgtcgggcgagatt
atcgagaccccgatcatctcgaacttcaaggaaggcctggacgtgctggagtacttcaac
tccacgcacggtgcccgtaagggcctggccgacaccgccctgaagaccgccaactccggc
tacctgacccgccgcctcgtcgacgtggcccaggacgcggtgatccgcgaggtggattgc
ggcacgacgagcggcatcaagatgcgcgccatcgtggatgccggccaggtcgtggcgacg
ctggccacccgcatcctcggccgcgccacagcggaggatctcgtggccgcggacggcacg
gtgatcgtcaagaccggcgagaccatcgaggagcggcacctgccggcgatcaacgccgcc
ggcatccaggaggtgaagatccgctcggtgctggtctgcgccaccaagagcggcgtctgc
gccacctgctacgggcgcgacctcgcccgcggcacgcccgtcaacatgggcgaggccgtc
ggcgtcatcgcggcgcagtcgatcggcgagccgggcacgcagctcacgatgcgcacgttc
cacatcggtggtgcggcccagatcgccgactcgtcgttcatcgagtcgagcttcgagggc
acgatcaagatccgcaaccgggcgatcgccaagaacacggacggggacctgatcgccacc
ggccgcaacgtggcggtggtcatcgtcgggcccgacggggtcgagcgggcggttcaccgc
ctgcaatacggcgccaagctccgcgtcgacgagggtgacaagatcaagcgcgggcagcgg
atcgccgagtgggatccctacacccgtccgatcctcaccgaggtcgacggcatcgtggcc
tacgaggatctggtcgacggccagtccatgaccgagaccaccgacgagtcgaccggcatc
gccaagcgcgtggtcgtcgactggcgcggctcggcccggacctcggacctgaagcccgcg
atggtcgtggtcgacaaggacggcaaggcgctcaagctgccccgcggctcggacgcccgc
tacttcctgccggtcgacgccatcatcggcttcgaccccggcgcgacggtcaaggccggc
gacatcctcgcccgcgtctcgaccgactcggccaagacccgcgacatcaccggcggtctg
ccgcgggtggcggagctgttcgaggcccggcgcccgaaggacgcggcgatcatcgccgag
aagtcgggcaccatcgcgttcggccgcgactacaagaacaagcgccggctcacgctgacg
ccgcacgacggctcggaggcggtcgagtacctgatcccgaagggcaagcacatccacctg
caggacggcgacgtggtggaactcggcgactacatcgtcgacggaaacccggccccgcac
gacatcctggcgatcaagggcgtggaggaactcgcggcctacctcgtcaacgagatccag
gaagtctaccggctgcagggcgtgtcgatcaacgacaagcacatcgaggtgatcgtccgt
cagatgctgcagaaggtcgaggtgaccgacggcggcgactcggacatcctctcgggtgac
cagatcgatcgcaccgagctgaccgacttcaacgagaagctgcttgccgagggcaagaag
ccgatccagggcgttccggtcctgctcggcatcaccaaggcgtcgctgcagaccaagtcg
ttcatctcggcggcctcgttccaggagaccacccgcgtcctcacggaggcggcggtcaac
ggcaaggtcgacaccctggaaggcctgaaggagaacgtcatcgtcggctcgctcatcccg
gccggcaccggctcgatggtggcggacatccgcgccatcgcccgccgccgcgacgcgatg
atcctgcagcagaagcagaccgagagcggcgcggtgccggtcgaggagcttccgcccgcc
gccgagtga
DBGET
integrated database retrieval system
