Methylobacterium mesophilicum: MMSR116_25770
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Entry
MMSR116_25770 CDS
T06344
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mmes
Methylobacterium mesophilicum
Pathway
mmes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMSR116_25770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmes03019
]
MMSR116_25770
Enzymes [BR:
mmes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MMSR116_25770
Messenger RNA biogenesis [BR:
mmes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MMSR116_25770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA_22
Utp25_C
CMS1
DUF8086
Motif
Other DBs
NCBI-ProteinID:
QGY04925
UniProt:
A0A6B9FVR2
LinkDB
All DBs
Position
complement(5380157..5381692)
Genome browser
AA seq
511 aa
AA seq
DB search
MTQFTDFGLAQPVLRALSEAGYVAPTPIQAQAIPPAMEGRDLCGIAQTGTGKTAAFALPI
LHRLSLSDRRAPRRGCRVLVLSPTRELANQIAESFTDYGRHLHYTTTVVFGGVTISRQER
ALAPGVDILVATPGRLIDLVDRRSLTLDGVEILVLDEADQMLDLGFIHALKRIVKMLPEK
RQSLFFSATMPKNIAGLAAQYLTDPVQVAVTPVATTAERVEQQVIFVHTGAKQALLGHIL
RDPAIERVLVFTRTKHGADRVVRGLDKVGIAAAAIHGNKSQPQRERALAAFKDGSCRVLV
ATDIAARGIDVEGVSHVVNFDLPNVPESYVHRIGRTARAGADGLAISFCNDEEKAYLRDI
ERVTRQKVPVAGFPEGFSPPSRQEAAEIAREEERRPERQQRPGGGRPGQRPRQQQGRPQQ
GRPEGGRGFGGQGAPRQGRPQDGRSDGRSDGRGQAPQGREFRADRPARPQGEPRPNQGRP
NRDGRPQRAESRPRGGGEGRSIGWLERAPRS
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
ttgacccaattcaccgatttcggcctcgcccagcccgtgctgcgggctctcagcgaggcc
ggctacgtcgcgccgaccccgatccaggcccaggcgatcccgccggccatggagggccgc
gacctctgcggcatcgcccagaccggcaccggcaagaccgcggccttcgcgctgccgatc
ctgcaccgcctgtcgctctcggaccgccgcgccccgcgccgcggctgccgggtgctggtg
ctgtcgccaacccgcgaactcgccaaccagatcgccgaatccttcacggattacggccgc
cacctgcactacaccaccacggtggtgttcggcggcgtcaccatcagccgccaggagcgg
gcgctcgcgccgggcgtcgacatcctggtcgccacgccgggccggctgatcgacctcgtc
gaccgccgctccctgaccctcgacggcgtcgagatcctcgtcctcgacgaggccgaccag
atgctcgacctcggcttcatccacgccctcaagcgcatcgtgaagatgctgccggagaag
cggcaaagcctgttcttctcggccaccatgccgaagaacatcgccggcctcgcggcgcag
tacctcaccgatccggtccaggtcgcggtgacgccggtcgccaccaccgccgagcgggtc
gagcagcaggtgatcttcgtccacacaggcgccaagcaggcgctgctcggccacatccta
cgcgatccggcgatcgagcgcgtcctcgtcttcacccgcaccaagcacggggcggaccgg
gtggtgcgcggcctcgacaaggtcggcatcgcggccgcggcgatccacggcaacaagagc
cagccccagcgcgagcgggcgctcgccgccttcaaggacggctcctgccgggtgctggtg
gccaccgacatcgcggcccgcggcatcgacgtcgagggcgtgagccacgtggtcaacttc
gacctgccgaacgtgccggagagctacgtccaccggatcggccgcaccgcccgcgccggc
gcggacgggctggcgatctcgttctgcaacgacgaggagaaggcctacctgcgcgacatc
gagcgcgtgacgcgtcagaaggtgccggtggcgggtttcccggagggcttcagcccgccg
tcgcgccaggaggccgcggagatcgcccgcgaggaggagcgccggcccgagcgccagcag
cgccccggcggcggccgtccgggtcagcggccccggcagcagcagggccggccccagcag
gggcggcccgagggcggacgcggcttcggcggccagggtgcgccccggcaggggcggccg
caagacggccggagcgacggccgaagcgacggccgcggccaggctccgcagggtcgtgag
ttccgtgcggaccgtcccgctcgcccgcagggcgagccgcgcccgaaccagggccgcccg
aaccgcgacggccggccccagcgggccgagtcccgcccgcgcggcggcggcgagggccgc
agcatcggctggctggagcgggcaccgcgctcctga
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