Methylobacterium mesophilicum: MMSR116_30390
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Entry
MMSR116_30390 CDS
T06344
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mmes
Methylobacterium mesophilicum
Pathway
mmes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMSR116_30390 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmes03019
]
MMSR116_30390 (rnr)
03016 Transfer RNA biogenesis [BR:
mmes03016
]
MMSR116_30390 (rnr)
Enzymes [BR:
mmes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MMSR116_30390 (rnr)
Messenger RNA biogenesis [BR:
mmes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MMSR116_30390 (rnr)
Transfer RNA biogenesis [BR:
mmes03016
]
Prokaryotic type
tRNA degradation factors
MMSR116_30390 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
QGY05727
UniProt:
A0A6B9FTH9
LinkDB
All DBs
Position
complement(6297731..6300052)
Genome browser
AA seq
773 aa
AA seq
DB search
MARRTTAPADEPAAPPPLPTREQILAFVAESKKRVGKREIAQAFGIKGAAKIDLKRLLKE
IEEDGALDRGRSGLAPVGHLPPVVLADIRSRDRHGDFLAVPAEWTGTGKPPAIVLTQGRG
PRKGSRPAAGIGDRALIRVARDAEGGYTGRVVKVIGKNRAEIIGVYRTGAQGGRIVPVEK
RSQGREILIPPGEEGEARDGDLVSVSMERETRFGLPRGRVRERLGSLGSEKAVSLIALHL
HNIPHVFAEATLAEADAAKPATLKGREDWRDRPLVTIDPPDAKDHDDAVMAEADHDPANP
GGFVLTVAIADVAAYVRAGSSLDREALERGNSVYFPDRVVPMLPERISNDLCSLREGEDR
PALAVRMVIAADGAKRRHSFHRVMMRSRAKLAYAQAQAAIEGHPDDATGPLLETALRPLW
TAYAALREARDRRGPLALDLPERKVLLSPDGAVDRVIVPERLDAHRLIEEFMIQANVAAA
ETLEHARQPLIYRVHDEPALEKMRALGEVLASVGIKLPKEGALRPALFNRILAMAAETEH
GVFLNEVILRSQAQAVYAAENLGHFGLNLRRYAHFTSPIRRYADLIVHRALITACRLGTD
GLASDISAGELAQIGEQISAAERRAMAAERETIDRLIAHHLADQVGATFEGQIAGVTRAG
LFIKLDETGADGFVPVSQLGADYFRHEEGRHALVGERTGETFRLGDRVEVRLVEAAPVAG
ALRFELLSEGRSRSGARKAGPGKKPGGRPFKAAPPGRPSGIRNTGSRHRGSRR
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
ttggcacgacgcaccaccgccccggcggacgagcccgccgctcccccgcccctccccacc
cgtgagcagatcctcgccttcgtcgccgagtcgaagaagcgcgtcggcaagcgcgagatc
gcccaggctttcggcatcaagggggccgccaagatcgacctgaagcgtctgctcaaagag
atcgaggaggacggcgccctcgaccggggccgcagcggcctcgccccggtgggtcatctg
ccgccggtcgtgcttgcagacatccgatcgcgggaccgccacggtgatttcctggcggtg
cccgcagaatggaccggcacgggcaaaccgccggccatcgtgctgacccaggggcgcggc
ccccgcaagggcagccggccggcggcgggaattggcgaccgggccctgatccgcgtcgcg
cgcgacgcggagggcggctacacgggccgggtcgtcaaggtcatcgggaagaaccgcgcc
gagatcatcggcgtctaccggaccggcgcgcagggcggccggatcgtgcccgtggagaag
cgctcgcaggggcgcgagatcctgatcccgcccggcgaggaaggcgaagcccgcgacggc
gatctggtcagcgtctcgatggagcgggagacgcgcttcggcctgccgcggggccgcgtc
cgggagcggctgggttcgctgggctccgagaaggcggtgagcctgatcgcgctgcacctg
cacaacatcccgcacgtcttcgcggaggcgactctcgcggaggccgacgccgccaagccc
gccacgctgaagggccgggaagactggcgcgaccggccgctcgtcaccatcgacccgccg
gacgccaaggatcacgacgacgccgtcatggccgaggccgatcacgacccggccaatccc
ggcggcttcgtcctcaccgtcgccatcgcggacgtggccgcctatgtgcgcgcgggttcg
agcctcgaccgcgaggccctggagcggggcaattcggtctacttccccgaccgggtggtg
ccgatgctgcccgagcggatctccaacgacctgtgctcgctccgggagggcgaggaccgg
ccggctctggccgtacgcatggtcatcgctgccgacggcgcgaagcgccgccacagcttc
caccgggtgatgatgcgctcgcgggccaagctcgcctacgcgcaggcgcaggccgccatc
gaggggcatccggacgacgcgaccgggccgctcctggagacggcgcttcgccccctctgg
acggcctacgcggccctgcgtgaggcccgggaccgccgcggcccgctcgccctggatctg
cccgagcgcaaggtcctgctctcgcccgacggcgccgtcgaccgggtgatcgtaccggaa
cgcctcgacgcgcaccggctaatcgaggagttcatgatccaggcgaatgtcgccgccgcc
gagaccttggagcacgcccgtcagccgctgatctaccgtgttcacgacgagcccgcgctg
gagaagatgcgggcgctgggcgaggttctggcttcggtgggcatcaagctgcccaaggag
ggggcgctgcgtcccgccctgttcaaccggatcctcgccatggcggccgagaccgagcac
ggcgtcttcctcaacgaggtgatcctgcgcagccaggcgcaggcggtctacgccgccgag
aatctgggccatttcggcctgaacctgcgtcgctacgcgcatttcacgtcgccgatcagg
cgctatgcggacctgatcgtccaccgggcgctgatcaccgcctgcaggctcggtaccgac
gggctcgcgtccgacatctcggcgggggaactcgcgcagatcggcgagcagatctcggcg
gccgagcgtcgggccatggcggctgagcgcgagaccatcgaccggctgatcgcccaccac
ctcgccgatcaggtcggggccaccttcgagggccagatcgcgggcgtgacccgcgccggc
ctgttcatcaagctcgacgagaccggggcggacggcttcgtgccggtctcgcagctcggc
gccgactatttccgccacgaggagggccgccacgccctcgtgggcgaacggaccggggag
acgttccgcctcggcgaccgggtcgaggtgcgcctcgtggaggccgcgccggtggccggc
gccctgcgcttcgagctgctcagcgagggccggagccgctccggcgcgcggaaggccggc
ccgggcaagaagcccggcggacgtccgttcaaggccgcgccgcccggtcgcccgtccggc
atccgcaacaccgggtcgcgccatcgcggctcgcgccgctga
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