Methanococcoides methylutens: MCMEM_0022
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Entry
MCMEM_0022 CDS
T03913
Name
(GenBank) Replication factor A (ssDNA-binding protein)
KO
K07466
replication factor A1
Organism
mmet
Methanococcoides methylutens
Pathway
mmet03030
DNA replication
mmet03420
Nucleotide excision repair
mmet03430
Mismatch repair
mmet03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mmet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MCMEM_0022
03420 Nucleotide excision repair
MCMEM_0022
03430 Mismatch repair
MCMEM_0022
03440 Homologous recombination
MCMEM_0022
03460 Fanconi anemia pathway
MCMEM_0022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mmet03000
]
MCMEM_0022
03032 DNA replication proteins [BR:
mmet03032
]
MCMEM_0022
03400 DNA repair and recombination proteins [BR:
mmet03400
]
MCMEM_0022
Transcription factors [BR:
mmet03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
MCMEM_0022
DNA replication proteins [BR:
mmet03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
MCMEM_0022
DNA repair and recombination proteins [BR:
mmet03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
MCMEM_0022
MMR (mismatch excision repair)
MCMEM_0022
DSBR (double strand breaks repair)
HR (homologous recombination)
MCMEM_0022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
CDC24_OB3
Ssb-like_OB
REPA_OB_2
OB_MEIOB_N
DUF3127
Motif
Other DBs
NCBI-ProteinID:
AKB84075
UniProt:
A0A0E3WY91
LinkDB
All DBs
Position
complement(21953..23077)
Genome browser
AA seq
374 aa
AA seq
DB search
MDEITEIYNKLGGIISEDDFRKKVEEKVEQMSGLCDVKTAAMLVAHDLGVTDTAKEVIKI
KDINPEIGNVNFVAKVVSVFDVREFNRNDGTIGKVGNLMVADDTGSIRLTLWDERADLIK
NGNIEVGDCMEISGYAKDGYSGTEVNIGRYGVINTTDQNIEVRLDSQKISEIRDGMGDIN
VSGKLLDISDVRTFQKKDGSQGRVGNILIGDETGKIRVTLWDEKVDSTKEMKLDDTIEII
NGYARTNNFSQQVEIQIGNHGVLRKTDAEVEYRENFTPIADIIPGESYSIEGSVSGLGEL
REFDRDDGTTNMVSNIYVSDDTGRIRIALWGDHALLVDELDIDTPIQIIDAYSKAGFNDE
IELSAGNRTRITIM
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggacgagataactgagatctacaataagcttggaggcattatcagcgaagatgatttt
cgaaaaaaggtagaggaaaaggtcgagcagatgagcggcctttgtgatgtcaagacagcg
gcaatgcttgttgcccacgatcttggtgtgaccgataccgcaaaggaagttatcaaaata
aaggacataaatcctgagatcggtaatgtcaacttcgttgcaaaggttgtctcagtgttc
gatgtacgcgagttcaacaggaatgatggtaccatcggaaaggtcggtaacctcatggta
gctgatgataccggctctatcaggctgacgctatgggatgaacgtgctgaccttatcaag
aacgggaatatcgaggtaggggactgcatggagatcagcggatatgcaaaggatggctat
tccggtacggaggtcaacatcggaaggtatggtgtgatcaacaccaccgaccagaacatc
gaggtcaggcttgactcacagaagatctccgagatccgggacgggatgggcgatatcaac
gtttccggaaagttgctggacatatcggacgtcagaaccttccagaagaaggacggaagc
cagggacgtgtcggtaacatactcattggtgacgaaaccggaaagatccgtgtgacattg
tgggacgaaaaggtcgattccacaaaggaaatgaagcttgatgacaccattgagatcata
aatggatatgccaggacaaacaacttcagccagcaggtagagatccagatcggaaaccat
ggagtcctcaggaaaacagatgcagaggttgagtacagggagaacttcactccaatagct
gatataatccccggtgaatcatattccatcgaaggctcagtatcaggccttggagagctc
agggaatttgacagggatgacgggaccaccaacatggtatcaaatatctatgtatccgac
gatacaggaaggatccgcattgcattgtggggagatcatgcactgcttgtggacgaactg
gacatcgatacccctatccagatcattgacgcatattcaaaagcaggtttcaatgatgag
atagaactaagtgcaggaaaccgtacaaggatcactataatgtga
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