Methanococcoides methylutens: MCMEM_0383
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Entry
MCMEM_0383 CDS
T03913
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mmet
Methanococcoides methylutens
Brite
KEGG Orthology (KO) [BR:
mmet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mmet03016
]
MCMEM_0383
Enzymes [BR:
mmet01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MCMEM_0383
Transfer RNA biogenesis [BR:
mmet03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MCMEM_0383
Prokaryotic type
tRNA splicing ligases
MCMEM_0383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AKB84436
UniProt:
A0A0E3SPD8
LinkDB
All DBs
Position
complement(408637..410109)
Genome browser
AA seq
490 aa
AA seq
DB search
MEEEQEGQGSIQESLKRIDNNIWEIPIGTKPGMNVPGRIFLSDKLIHNLEPEALDQVANV
AMLPGIQKYSMAMPDAHLGYGFPIGGVAAFDEEEGVISPGGVGFDINCGVRLLRSNLTVD
DVRPVMKELTEKLFQSVPAGVGSKSRLRASDSELDDIFLHGSRWAVENGYGVEADLEHCE
GGGCIEGGDVSHISAKARKRGKPQAGTLGSGNHFLEVQYIDQIYDQEVAEKFGLEEGQVT
FMIHCGSRGTGHQICTDHLRTISQASKKYKIALPDKQLACAPAQSDEAQNYFRSMICAAN
YAWNNRQIITHWTREVISDIFRSDMDELGLDLVYDVAHNVAKLEEHTVDGKKKNVYVHRK
GATRAFPPGHKEVPQAYRDVGQPVLIPGSMGTASFVLHGAEASMDISFGSACHGAGRVMS
RAHAKKEFHGEDVKSDLEKSGIMVRAAHPSVIAEEAPEVYKSSSDVVNVVHDLGIAGKVA
RMMPLGVVKG
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagaacaagaaggacagggcagcatacaggaatcactcaaaaggatagacaat
aacatatgggagatacccatcggaacaaagccgggaatgaatgtcccgggaaggatattt
ctctcagacaaacttatccacaaccttgagccggaggcactcgaccaggttgcaaacgtg
gcaatgcttcccggaattcagaaatattccatggccatgcccgatgcacaccttgggtac
ggcttcccaataggaggcgttgccgccttcgacgaggaagaaggagttatcagccccggt
ggcgtcggttttgacatcaactgcggagttcgcctcctgcgttccaatctcactgttgat
gatgtacgccctgtgatgaaagagctcacagagaagcttttccagtccgtgcctgcaggc
gtgggttcaaaaagccgcctgagggcatcagatagtgaacttgacgatattttcctgcac
gggtcccgctgggcagttgagaacggttacggcgtggaagctgatctcgagcactgcgaa
ggcggtggatgcattgaaggaggagatgtcagccatatcagcgccaaagcccgcaagaga
ggaaaaccacaggccggaacactgggcagtggtaaccacttccttgaggtacagtacatc
gaccagatatatgaccaggaagttgccgagaagttcgggctggaagaagggcaagtcacc
ttcatgatacactgcggttcaagaggtacagggcaccagatctgtacggatcaccttcgt
acgatctcacaagcctcaaagaagtacaagatcgcacttcctgacaaacagcttgcatgc
gctccggcacagtctgatgaagcacagaactacttcagatccatgatatgcgctgcaaat
tatgcatggaataacaggcagatcatcacccactggaccagagaggtcatttcggatata
ttcaggtcagacatggatgagctcggacttgatcttgtatatgacgttgcacacaacgtt
gcaaagctggaagagcatactgtggacggtaagaaaaagaatgtctatgtccacaggaaa
ggcgctacaagggcattcccacctggacacaaggaagttccgcaggcatatcgtgacgtg
ggacaaccggtattgataccaggaagtatggggactgcatctttcgtacttcacggagca
gaggcctcaatggacatctctttcggaagtgcatgccacggagccggcagggtcatgagc
cgtgcccatgcgaaaaaggagttccacggcgaggatgtcaagagcgatcttgagaaaagc
ggaatcatggtcagagcagcacatccatctgttatcgcagaggaagcacccgaggtttac
aagtccagcagtgatgtggtcaatgttgtccacgatcttggcatcgcaggaaaggttgcc
agaatgatgcctcttggtgttgtaaaaggctga
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