Methanococcoides methylutens: MCMEM_0642
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Entry
MCMEM_0642 CDS
T03913
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mmet
Methanococcoides methylutens
Pathway
mmet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCMEM_0642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmet03019
]
MCMEM_0642
03400 DNA repair and recombination proteins [BR:
mmet03400
]
MCMEM_0642
Enzymes [BR:
mmet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MCMEM_0642
Messenger RNA biogenesis [BR:
mmet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MCMEM_0642
DNA repair and recombination proteins [BR:
mmet03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MCMEM_0642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AKB84695
UniProt:
A0A0E3X0X4
LinkDB
All DBs
Position
680122..682080
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AA seq
652 aa
AA seq
DB search
MHRTLQKYFGYSEFRPLQEDIIRDVLDGKDTFVLMPTGGGKSICYQIPALMMDGLAIVVS
PLISLMKDQVDGLVSNGIAAAYLNSTLSYREQQETTRAIVDGHVKILYVAPERLCMKSTL
ELLKYVNISLFAIDEAHCISQWGHDFRPEYRRLGFLKEKFPDVPVIGLTATATPKVKEDT
IKLLKLRSPSVYVASFNRSNLSYEIRQKKNTFGDLEDLLKSHDGDSGIIYCNSRKSVESL
SRKLNNKGFHTLPYHAGLSDSKRHEHQERFIRDDIEIIVATVAFGMGIDKPNVRFVVHYD
LPKNIEGYYQETGRGGRDGLECECVLYFSRGDWYKIKYFIDKMSKKSERDIATVKLREMI
DFCESTTCRRKVLLGYFGEELESDYCGGCDVCLKPRDTYDASEAARVLLSCVDEVNERFG
LTHVVDIISGSRAKKIKSYKHDRLKSYASGEGYTKSEWLDMAREMVRLGFLDVKGAKYPL
LNLNKKSREVLAGGEVWLTRPSDAVAAKPGKPKTTISRSTTSKSNSSNRARPITSVSKTS
NSKSATSKKTTSKATASKKSTADKKSKRVPTPISRPDKKLFDRLKKLRKRLAEDEDVPPY
IIFADTSLRQMAVKYPIKNEEFLDITGVGEFKLKKYGPVFMEEITRYLKGSK
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgcacaggacactccagaaatacttcggctacagcgaattccgcccccttcaggaggat
atcatcagggatgtccttgatgggaaggacactttcgtattgatgcctaccgggggcggg
aagtctatctgctaccagatccctgcacttatgatggatggtcttgctatcgtggtgtct
cctctcatatctcttatgaaggatcaggtggatggcctggtcagcaacgggatagctgct
gcttatcttaacagcacgttaagctatcgcgagcaacaggagaccacacgtgccatagtg
gatggtcatgtgaagatactatatgttgctcctgaaagactttgcatgaaaagtactctg
gaacttctcaagtatgtgaacatcagcctgttcgccatcgatgaggcacattgcatttca
caatggggtcacgacttcaggcccgaataccgtcgtcttgggtttttgaaggaaaagttc
cctgacgttccggtcattgggctgactgcaaccgccacaccgaaggtcaaggaggacact
attaaattgctcaagctgaggtctccttctgtatatgtggcaagttttaatcgcagcaat
ctttcctatgagatccgacagaaaaagaacacatttggtgatctggaggatctcctcaaa
agccatgatggtgattcgggaatcatctactgcaacagccgaaagagcgtggaatccctt
tccaggaagctcaacaacaaaggttttcatactttgccctatcatgcgggcctgtcagat
tccaaaagacatgaacaccaggaacgcttcataagggatgatattgaaataatcgtggcg
acagtggcatttggtatgggtattgacaaaccgaatgtgagatttgtcgtccactatgac
cttcccaagaacattgagggatactatcaggaaaccggcaggggtggccgtgacggtctt
gaatgtgaatgcgtcctgtatttcagtcgtggtgactggtacaagatcaagtacttcatt
gataagatgtcgaaaaagtccgaacgtgatattgcaacggttaaactccgggaaatgatc
gatttctgtgaaagcacaacgtgccgcaggaaggtcttgcttggttatttcggagaggaa
ctggaatctgattattgtggcgggtgcgatgtctgccttaagccacgtgatacttatgat
gcctcggaggctgcaagggtgctgctgtcctgtgtggatgaggtcaatgaacgctttggc
ctgacgcatgtggtggatatcatctcaggttcccgggcaaagaagataaaaagctacaag
catgaccgtctcaaaagctatgcttccggtgagggctatacgaagtccgaatggctcgat
atggctagggagatggttcgtcttggtttccttgatgttaaaggggcgaaataccccctg
ttaaacctgaacaaaaagagccgggaagttcttgcaggtggggaggtctggttgacgcgg
ccgtctgatgcggttgcggcgaaacccgggaaacccaaaactacgatttcaagatcaacg
acttcaaagagcaatagctcaaatagggctcgtccaattacctctgtttcaaagacttcc
aattcaaagagcgccacctctaaaaagactacctctaaggcaactgcatcaaagaagtcc
actgctgataaaaagtcaaagagggttccaacccctatatcacgccccgataaaaaatta
ttcgaccggcttaagaagttaagaaaaagactggcagaggatgaggacgttccgccttac
atcatctttgcggatacaagccttcgccagatggcggtaaaatatcctataaagaacgag
gagttccttgacattacaggcgtcggtgagttcaaattaaaaaagtacgggccagtcttc
atggaagagatcacccgttatttgaaaggttctaaatga
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