Methanococcoides methylutens: MCMEM_0816
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Entry
MCMEM_0816 CDS
T03913
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mmet
Methanococcoides methylutens
Pathway
mmet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCMEM_0816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmet03019
]
MCMEM_0816
Enzymes [BR:
mmet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MCMEM_0816
Messenger RNA biogenesis [BR:
mmet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MCMEM_0816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AKB84869
UniProt:
A0A0E3WZI1
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All DBs
Position
849492..850949
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AA seq
485 aa
AA seq
DB search
MSEEGYVEPTPIQELSIPHLMNGRDMIGIAQTGTGKTAAFILPILHNMSESYKAPRPRFP
KVLVLAPTRELAAQIGDSFSTYGKFTRFKHTVVFGGVGQMPQVKALSKGVDSLVATPGRL
LDLMEQGHVNLSSVEYFVLDEADRMLDMGFINDVYKIVDLLPQKRQSLFFSATMSPEISK
LARKLLSNPAHVEVTPQATTVERIDQFIFFVDSEDKNELLLHLLRGKHLECVLIFTRTKH
RANKVTEMLNKNNIPAGAIHGNKSQTHRTKTLQSFKTGELRVLVATDIAARGIDIEDISH
VINYDLPNIPESYVHRIGRTARAGADGTAYSFCAADERDFLRDIEELTNMEIEVAEHNYH
SEKARNATGDAARPAPKKQRGRKATPGNKGRGRGRKADGKGKDKDKGSRGNAESKSRGGD
VRGKKGASSGRSGDSRSKNAGSKGKPSGSKSGNKTGRSGNSNTGQGRNKGGKRSGQNSGR
SGNRK
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgaagagggctacgtagaacccactcccatacaggagctatccattcctcatctg
atgaacggcagggatatgatcggcatcgcacagaccggtaccggcaagactgctgcattc
atattaccaattcttcacaacatgtctgagtcctacaaggcaccacgtcccagattcccc
aaggtgcttgttcttgcacccacaagggaacttgcagcacagataggggatagcttttcc
acatatggcaagttcacccgattcaagcatacggttgtattcggcggcgttgggcagatg
ccacaggtaaaggctctctcaaaaggtgtcgattcacttgtggccactccgggcaggctt
ctggacctgatggagcagggacatgtcaatctctcgagtgtggaatatttcgtacttgac
gaagcggacaggatgctcgatatgggcttcatcaatgatgtgtacaagatagttgacctg
cttccacaaaaacgccagtcgcttttcttctcagctactatgtcgcctgagatctccaaa
ctcgccagaaaattgctcagtaaccctgctcatgtagaggtcactccacaggcaacaact
gttgaacgcatagatcagttcatctttttcgtagattcagaggacaagaacgaattgctt
ttgcatttgttgagaggtaagcatctggaatgtgttctcatatttacacgtacaaagcac
cgggccaacaaggtcacagagatgctcaacaagaataacatccctgcaggtgcgatccac
ggtaacaagtcccagacccaccgtacaaagaccctccagagcttcaagaccggagaattg
cgtgtacttgttgcaactgacatagctgcccgtggaattgatatcgaggatatctcccac
gtgatcaactacgatctgccgaacatccctgaaagctacgtgcaccgtataggacgtaca
gcaagggcaggggcggatggtacagcatactccttctgtgcagctgatgagcgagacttc
ctccgtgatatcgaagagctcaccaacatggagatcgaggtcgctgaacacaattatcac
tccgaaaaggcccggaatgccacaggagatgcagcaagaccggctcctaagaaacaacga
ggcagaaaggcaacccctggaaacaaaggtcgtggaaggggtaggaaggctgacggcaaa
ggtaaagataaggataaaggcagtcgcggtaatgccgaaagcaaatccaggggtggagat
gtcaggggcaaaaagggagctagtagtggcagatctggtgacagccggagcaagaacgca
gggtccaaaggcaaaccgagcggctctaaaagtggaaacaagactggtcggtcaggaaat
tccaataccgggcagggtaggaataagggtggaaagcggtctggtcagaactccggcagg
tccggtaatcgcaagtga
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