Methanococcoides methylutens: MCMEM_2007
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Entry
MCMEM_2007 CDS
T03913
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mmet
Methanococcoides methylutens
Pathway
mmet03410
Base excision repair
mmet03430
Mismatch repair
mmet03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mmet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MCMEM_2007
03430 Mismatch repair
MCMEM_2007
03440 Homologous recombination
MCMEM_2007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmet03400
]
MCMEM_2007
DNA repair and recombination proteins [BR:
mmet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MCMEM_2007
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MCMEM_2007
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MCMEM_2007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
SelA
Motif
Other DBs
NCBI-ProteinID:
AKB86060
UniProt:
A0A0E3X142
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All DBs
Position
2168923..2170311
Genome browser
AA seq
462 aa
AA seq
DB search
MIEKIKQIKAKALSCSSEIQKYESVYVVSHIDADGLTSAGIIGKALERAGIEHTIHFIKQ
LDEVEIENIANKNPELAIFTDLGSGMIESLNSHGINSVISDHHQPRGELENHLNPHLFGF
NGSYELSGSGMTYMLANALGDNRDLADLAIVGAIGDLQHLKKGQLTGINRYILEEGAKEG
NLHYEKDIMLFGKQTRPVFKLLQFASDPYLPGLTGNEDACIGFLHDLGIRFSRDERWRRW
IDLEQNDKQKIVSALIQYSLRSGLPPYKIERLIGEVYLLMNEKEGTEMRDASEYSTLLNA
TARYGHADIGLAVCMGDRGEAYESARQLLSEHRQNLVNGLMFVKENGITEMKNLQYFDAG
SSIMETIVGIIAGMSTSVVGNRSLPIIAFADAKDGVKVSARGTQDLIRKGLNLSEAMAVS
TAEVGGAGGGHDIAAGATIPFDAKEKFLQKLDSVLGEQLRKK
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaaaaataaaacagataaaagcaaaagctttaagctgttcatctgaaatacag
aaatacgagtctgtatatgtggtgtcccacatagatgctgacggcctcacatcagcaggg
ataatcggcaaagcccttgagagggcagggatcgagcacaccatacattttatcaagcag
cttgacgaggtagagatagagaacatcgccaacaaaaacccggagcttgccatcttcact
gacctggggagcggaatgatagaatccctgaactcacatggcatcaactccgtgatatca
gaccaccaccaaccaaggggagaactggagaaccacctgaacccccaccttttcggattc
aatggttcatacgagctaagcggctccggaatgacctatatgcttgcaaatgccctggga
gacaacagggaccttgccgatcttgccatcgtcggggccataggtgacctccagcatttg
aaaaagggacaactcacaggcatcaaccgctacattctcgaagaaggtgcaaaggaaggc
aacctgcattacgagaaggacataatgctctttggaaaacagacacgtcccgtattcaaa
cttctccagttcgcatccgacccatacctccccggacttaccggaaatgaggatgcatgc
atcggattcctccatgacctgggaatacgcttcagcagggatgagcgctggaggagatgg
atagaccttgaacagaatgacaagcagaagatcgtctcggcactgatacagtattccctc
cgctcaggcctgccaccttataagatcgagaggcttatcggagaggtctaccttctcatg
aatgaaaaagaaggcacggaaatgagggatgcttcggaatattccaccctgctcaacgcc
acagcgcgctacgggcatgctgacatcgggctggcagtctgcatgggagaccgcggcgaa
gcttacgaatcagcccgccaattgttaagtgagcatcggcagaaccttgttaacggactc
atgttcgtcaaggagaacggcataaccgagatgaagaacctgcagtacttcgatgcgggc
tcaagtataatggaaaccattgtcgggatcattgcaggaatgagcacatcggttgttggg
aacagatccctcccgataatagcctttgcagatgcaaaggatggtgtcaaggtctcggcg
cgcggcacacaggacctgatcaggaaagggcttaacctctccgaggccatggcggtcagt
actgcagaggtcggtggtgcaggaggaggccacgatattgcggcaggtgccactatccca
ttcgatgcaaaagaaaagttccttcaaaagctggattctgttttaggagagcaattgcgg
aaaaaatga
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