Molossus molossus (Pallas's mastiff bat): 118643632
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Entry
118643632 CDS
T07221
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mmf
Molossus molossus (Pallas's mastiff bat)
Pathway
mmf03013
Nucleocytoplasmic transport
mmf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mmf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118643632 (UPF1)
03015 mRNA surveillance pathway
118643632 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmf03019
]
118643632 (UPF1)
Enzymes [BR:
mmf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118643632 (UPF1)
5.6.2.5 RNA 5'-3' helicase
118643632 (UPF1)
Messenger RNA biogenesis [BR:
mmf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118643632 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
118643632 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
118643632
NCBI-ProteinID:
XP_036137765
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGPG
VPVGAGAGAATGQLDAQVGGPEGILQNGAVDDGVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQLGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPSSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtatgggcccagctcgcagacactcactttcctggacaccgaagag
gccgagcttctcggcgccgacacgcagggctctgagttcgagttcacagacttcaccctt
cccagccagactcagacacctcccggaggccccggaggcccgggaggtggcggcccggga
gtcccggtcggcgcgggcgcgggtgctgcgaccggacagcttgacgcccaggttggagga
cctgagggcatcctgcagaatggggccgtagatgatggcgttgccaagaccagccagttg
ctggctgagttgaacttcgaagaagatgaagaggatacctattacacaaaggacctacca
gtacatgcctgcagttactgtggaatacacgatcctgcttgcgtggtttactgtaatacc
agcaagaagtggttctgtaacggacgtggaaatacttctggcagccacattgtaaatcac
cttgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggccccttggagagact
gtcctggagtgttacaactgtggctgccgcaacgtcttcctccttggcttcattcccgcc
aaggccgactcggtggtggtgctgttgtgcaggcagccctgtgccagtcagagcagcctc
aaggacatcaactgggacagctcacagtggcagcccctgatccaggatcgctgcttcctg
tcctggctggtcaagatcccttcagagcaggagcagcttcgggcccggcagattactgcc
cagcagatcaacaagctggaggagctgtggaaggagaatccttctgccaccttggaggac
ctggagaagccgggggtggatgaggagccgcagcacgtcctcctgcggtacgaggacgcc
taccagtaccagaacatatttgggcctctggtcaagctggaggctgactatgacaaaaag
ctgaaagagtcacagactcaagataacatcacagtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttacccaagactgactctggtaatgaggatttagtcata
atttggttaagagatatgcgactcatgcagggagatgagatatgcctgcggtacaaaggg
gacctggcacccctgtggaaagggattggccatgtcatcaaggtccctgataattatggt
gatgaaattgccattgagcttcggagcagtgtgggtgcacctgtggaggtgacacataac
ttccaggtggattttgtatggaagtccacctcatttgacaggatgcagagtgcgctgaag
acctttgccgtggatgagacctctgtgtcaggctatatctaccacaaattgcttggccat
gaggtggaggatgtgatcattaagtgccagctgcccaagcgcttcactgcacaggggctg
cctgacctcaaccactctcaggtttatgccgtgaagactgtgctgcagagaccgctgagc
ctgatccagggaccaccaggaacggggaagacagtaacctcggccaccattgtctaccac
ctggcacggcagggcaatgggcctgtgctcgtctgtgctccaagtaacatagctgtggat
cagctgactgagaagatccaccagactgggctgaaagtcgtgcggctctgcgctaagagc
cgtgaggccatcgactccccagtgtcattcctggccctgcacaatcagatcaggaacatg
gatagcatgccagagctccagaaactgcagcagctgaaggatgagactggggagctgtca
tctgctgatgagaagcggtaccgagccctgaagcgtacagctgaaagggagctgctcatg
aatgcggatgtcatctgctgcacgtgtgtgggtgcgggggaccctaggctcgccaagatg
cagttccgctccattcttattgatgagagcacccaggccactgagccagagtgcatggtc
cctgtggtccttggagccaagcagctgatccttgtgggtgaccattgccaactgggccct
gtggtgatgtgcaagaaggcagccaaggctgggctgtctcagtcgctgttcgagcgcctg
gtggtgctgggcattcgtccaatccgcttgcaagttcagtatcggatgcaccctgcgctc
agtgccttcccatccaacatcttctatgagggctctctgcagaacggtgtcactgcagcg
gatcgagtgaagaaggggtttgacttccagtggccccaacctgataagccgatgttcttt
tatgtgacccagggccaggaggagatagccagctcgggtacctcctacttgaacaggacg
gaagctgcaaatgtggaaaaaatcaccacgaagctgctgaaggcaggtgctaagcccgac
caaattggcatcatcacgccctatgagggtcagcgctcctacctggtgcagtacatgcag
ttcagcggctccctgcacaccaagctataccaggaggtagagattgccagcgtggatgca
ttccagggacgcgagaaggactttatcatcctctcctgcgtgcgagccaacgagcaccaa
ggcattgggtttttaaatgaccccaggcggcttaatgtagccctgacccgagcaagatac
ggtgtcatcattgtgggcaaccccaaagccctgtctaagcagccgctgtggaaccacctg
ctgaattactacaaggagcagaaggtgctggtagaggggcccttgaataacctacgggag
agcctcatgcagttcagcaagccccggaagctggtcaacaccatcaatcctggagcccgc
ttcatgaccacagctatgtatgatgcccgggaagccatcatcccaggatcggtctatgat
cggagcagccagggccggccctcaaacatgtacttccagacccacgaccagctcggcatg
atcagtgctggccccagccacgtggccgccatgaacattcccatcccctttaacctggtt
atgccacccatgccgcccccagggtactttggacaggctaatgggccagctgcaggccga
ggcaccccaaaaggcaagacgggtcgtggtggacgccaaaagaaccgctttggccttcct
gggcccagccagacaaacttgcccagcagccaggccagccaggatgtggcgtcacagccc
ttctctcagggggccctaacgcagggctacatctccatgagccaaccgtcccagatgagc
cagcctggtctctcccagcctgagttgtcccaggacagttaccttggtgatgagtttaag
tcccagattgatgtggcgctgtcgcaagattccacgtaccaaggggaacgggcataccag
catggtggagtgacggggctgtctcagtactag
DBGET
integrated database retrieval system
