Methanothermobacter marburgensis: MTBMA_c01830
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Entry
MTBMA_c01830 CDS
T01297
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mmg
Methanothermobacter marburgensis
Brite
KEGG Orthology (KO) [BR:
mmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mmg03016
]
MTBMA_c01830
Enzymes [BR:
mmg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MTBMA_c01830
Transfer RNA biogenesis [BR:
mmg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MTBMA_c01830
Prokaryotic type
tRNA splicing ligases
MTBMA_c01830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADL57792
UniProt:
D9PU94
LinkDB
All DBs
Position
complement(187536..188984)
Genome browser
AA seq
482 aa
AA seq
DB search
MDIREDLVKVRESVWEVPTSYKKGMRVPGRIFLKDEALRDLEKGAVDQVANVACLPGIQK
FSIGLPDIHFGYGFSIGGVGAFSARTGVISPGGVGFDINCGVRMVRTNLDHEDVRPKIRE
LINTLFTNVPSGVGSKGKIRLRPGEIDEVLENGAEWAIENGYGWDQDLKFLEENGKMEDA
SADKVSDKAKKRGIPQLGSLGSGNHFLEVQMIDEIFNEEAAAAYGVSPGKVAVMIHSGSR
GCGHQVCSDYLRLMDKAYRRYKINIPDRQLACAPVDSDEAMDYFQAMAAAANYAWANRQM
IVHWVRESFESVFGMSAEDMEMEIVYDVAHNIAKREVHTVKGRDTELFVHRKGATRAFGP
GRKEIPGEYRKIGQPVIIPGTMGTSSYLLHGTEVAMEETFGSTAHGAGRKMSRAGAKKTY
RGEEVQRKLESEGIYVRATSMPVVAEEAPGAYKDVDLVVRTAHETGISMLVARMLPLGVA
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggatataagggaagatctggttaaggtaagagaatccgtctgggaagttccaacatca
tacaagaagggaatgagggttcctggaagaatattcctgaaggatgaggccctcagggac
cttgagaagggggctgttgatcaggttgcaaacgttgcatgtctccccgggatccagaag
ttttcaattggacttccagatatacacttcggatacgggttcagcatagggggtgtgggt
gcattcagcgcccgcacaggagtcataagccctgggggtgttggattcgacataaactgt
ggtgtccgcatggtcaggaccaatctggaccatgaggatgtgaggccaaagataagggaa
cttataaacaccctcttcaccaatgtaccatcaggtgttgggagtaagggaaagataagg
ctcaggcccggtgaaatcgatgaggttcttgaaaacggggctgaatgggccattgaaaat
ggatacggatgggatcaggacctcaaattcctggaggagaacggcaaaatggaggatgcc
agtgcagataaggtcagtgataaggccaagaagagaggcataccccagcttggatccctt
ggatcaggtaaccacttcctcgaggtccagatgatagatgagatattcaacgaggaggct
gccgccgcctacggtgtgagccccggcaaggtcgccgttatgatacactcaggttcaagg
ggatgcggccaccaggtatgctcagactacctgaggcttatggacaaggcatacaggagg
tacaagataaacatacctgacaggcagcttgcctgcgccccggtggactcggatgaggcc
atggattacttccaggccatggcagccgcagccaactatgcctgggccaaccgtcagatg
atagtccactgggtgagggagtcctttgaaagtgtcttcgggatgagcgcagaggacatg
gagatggagatcgtctatgacgtggcacataacatagcaaagagggaggttcacactgta
aagggacgtgatacagagctcttcgtccaccgtaagggagccacaagggcctttggaccg
ggcagaaaggagattcccggtgaatacagaaagatcggtcagccggtcataattccaggt
accatggggacatcatcctacctgctccacggaacagaggttgcaatggaggaaaccttc
ggttcgaccgcccacggggcagggagaaagatgagccgtgcaggtgcaaagaaaacctac
cgtggagaggaggttcagaggaaacttgaaagtgagggcatctatgtgcgggcaacatcc
atgccagtggttgcagaggaggcccccggtgcctacaaggatgttgacctggtggtcagg
acagcccacgagaccggcatatccatgcttgttgcaaggatgctcccactgggagtcgca
aagggatag
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