Methanothermobacter marburgensis: MTBMA_c17040
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Entry
MTBMA_c17040 CDS
T01297
Name
(GenBank) predicted RNA-binding protein
KO
K07573
exosome complex component CSL4
Organism
mmg
Methanothermobacter marburgensis
Pathway
mmg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTBMA_c17040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmg03019
]
MTBMA_c17040
Messenger RNA biogenesis [BR:
mmg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MTBMA_c17040
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MTBMA_c17040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
A2L_zn_ribbon
OB_RRP5_4th
Zn_ribbon_TiaS
HypA
Zn_Tnp_IS91
DmmA-like_C
Spt4
Defensin_5
OB_MEIOB_N
Motif
Other DBs
NCBI-ProteinID:
ADL59273
UniProt:
D9PYH5
LinkDB
All DBs
Position
complement(1548289..1548858)
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AA seq
189 aa
AA seq
DB search
MKVKSGDIVFPGDFLAVSEEVLPSEGTYDDDGEIKSLVVGEVARDDRNKSIKVISKFSTP
PVLRTGSRVIGEVIDVRGQRALVRIHSIKGNRRALATYFVGGVHVSQAKKGYLSKLTEAF
RIGDIVEARVTKVMGLDGIDLQTSSRDLGVIKAMCTRCRHFMEMNGRDEVRCPNCENREK
RKLSANYEG
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttaaatctggggacatagtttttcccggagactttttagctgtaagtgaagag
gtactcccctcagaggggacctacgacgacgatggagaaataaagtcccttgttgttgga
gaggttgcaagggatgataggaataagagcataaaggtaatctcaaagttcagcacaccc
cccgtcctcaggacaggctcaagggttattggagaggtaatagatgtgaggggccagagg
gcccttgtgagaatacacagcatcaagggtaacaggagggcccttgcaacctactttgtt
gggggcgtccatgtttcacaggcaaagaagggctacctctctaaacttacagaggccttc
aggataggggatatagtggaggcaagggttacgaaggttatgggccttgatggtatagac
ctccagacctcatcccgtgaccttggtgtcataaaggccatgtgcacaaggtgcaggcac
ttcatggagatgaacggcagggacgaggtgaggtgtcccaactgtgaaaacagggaaaaa
aggaaactatcagcgaattatgaaggttaa
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