Mycobacterium marinum M: MMAR_4100
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Entry
MMAR_4100 CDS
T00694
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mmi
Mycobacterium marinum M
Pathway
mmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMAR_4100 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmi03021
]
MMAR_4100 (rho)
03019 Messenger RNA biogenesis [BR:
mmi03019
]
MMAR_4100 (rho)
Transcription machinery [BR:
mmi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MMAR_4100 (rho)
Messenger RNA biogenesis [BR:
mmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MMAR_4100 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
VWA_2
AAA_22
DUF7440
Motif
Other DBs
NCBI-ProteinID:
ACC42507
UniProt:
B2HQL5
LinkDB
All DBs
Position
complement(5050866..5052731)
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AA seq
621 aa
AA seq
DB search
MTDTDLITAGESTDADKKSDSVTKDSSDLNTAAPTGALATMVLPELRALANQVGVKGTSG
MRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSASTEAPAVNEATKDAPQQEQNASS
GDTVRRERRRSSRDSGTSSRDGADSAGGSPDKRGKRAAGGDADNNQKAPEKAQEDAKTDG
GAAESGGDQGAGQQGSGGQQSRGEDDGEGRQGRRGRRFRDRRRRGERSGDGSDAELREDD
VVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREGEQ
PNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQRLRLETTTERLTTRVIDLIM
PIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRSVKGE
VIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILS
GGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLD
RKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKT
KNNYEFLVQVSKTTPGNMDND
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
gtgactgatacggacctcatcacggctggcgaaagcaccgacgctgataagaagtcggat
tccgtgacaaaagacagttccgacctcaatactgctgcgccgaccggcgcgctggccacc
atggtgctgcccgaactgcgcgcgctggccaaccaagttggtgtcaaggggacgtcgggc
atgcgtaagaacgagctgatcgccgcgatccaagaatttcgggaccgcgccaatggcacg
cccgcggccgccgagccaacctcagattccggcgaacagaagtcctcggcgagtaccgag
gccccagcggtcaacgaggccaccaaagacgctcctcaacaggagcaaaacgcctcatcc
ggcgacacggtgcgccgcgagcggcgcagatcctcgcgtgactcgggaacgtcgtcacgt
gacggcgcggactcggctggcggaagcccagataaacgcgggaagcgggccgctggcggc
gatgccgacaacaatcagaaggcgccggaaaaggctcaagaagacgccaagactgacggg
ggagcagcggagtcgggcggtgaccaaggcgccggccagcagggctcgggtggccagcaa
tcgcgcggcgaagacgatggcgaagggcggcagggccggcgaggacgccgattccgcgac
cgccggcgtcgtggggagcgctcgggtgacggttccgacgccgagttgcgtgaggatgac
gtcgtccagccggtcgccggcattcttgacgtgctcgacaactacgcctttgtccgtacc
tccggctaccttgccggcccgcacgacgtctacgtgtcgatgaacatggtgcgcaagaac
ggcctgcgccgcggcgacgcggtcaccggcgccgttcgggttccgcgcgaaggcgagcag
cctaaccagcgacaaaaattcaacccgctggtgcgtttggacagcgtcaatgggggatcg
gtcgaggacgccaagaagcggcccgaattcggcaagctgacgccgctctatcccaaccag
cgtcttcgcttggaaaccaccacagagcggctgaccacgcgggtcatcgatctgatcatg
ccgattggcaagggccagcgcgcgctgatcgtctcgcccccgaaggccggtaagacgacg
atcctgcaggacatcgccaacgcaattaccaagaacaatccggaatgccacctcatggtc
gtgctcgtcgacgagcggcccgaggaggtcaccgacatgacgcgttcggtcaagggtgag
gtcatcgcctcaacgttcgaccgcccgccatccgaccacacatcggtcgcggagctggcc
atcgagcgcgccaagcgcctcgtggagcagggcaaagacgtcgtggtgctgctggactcc
atcacccggttggggcgtgcctacaacaacgcgtcaccggcatcgggccggattctctcc
ggtggtgtcgactccaccgcgctgtacccgcccaagcgattcctgggtgcggcacgcaac
atcgaagaaggcggctcgctgaccatcatcgcgaccgcgatggtcgagaccggctccacc
ggtgacaccgtcatcttcgaagagttcaagggcaccggtaacgccgagctcaagctggac
cgcaagatcgccgagcggcgcgtcttccccgcggtcgacgtgaacccgtcgggtacccgt
aaggatgagctgctgctctcacctgacgagttcgccatcgtccacaagctgcgtcgcgtg
ctgtccggcctggattcccaccaggccatcgacctgctgatgtcgcagctgcgtaagacc
aagaacaactacgagttcctcgtgcaggtctccaagaccacaccagggaatatggacaac
gactag
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