Mycobacterium marinum M: MMAR_4189
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Entry
MMAR_4189 CDS
T00694
Symbol
deaD
Name
(GenBank) cold-shock DEAD-Box protein, DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mmi
Mycobacterium marinum M
Pathway
mmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMAR_4189 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmi03019
]
MMAR_4189 (deaD)
03009 Ribosome biogenesis [BR:
mmi03009
]
MMAR_4189 (deaD)
Enzymes [BR:
mmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MMAR_4189 (deaD)
Messenger RNA biogenesis [BR:
mmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MMAR_4189 (deaD)
Ribosome biogenesis [BR:
mmi03009
]
Prokaryotic type
rRNA helicases
MMAR_4189 (deaD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
HEM4
UvrA_inter
CMS1
B_solenoid_dext
Motif
Other DBs
NCBI-ProteinID:
ACC42597
UniProt:
B2HRG6
LinkDB
All DBs
Position
complement(5157316..5159031)
Genome browser
AA seq
571 aa
AA seq
DB search
MANPENPPAVPPATFADLQIHPSVMRAIADVGYESPTGIQAATIPALMAGSDVVGLAQTG
TGKTAAFAIPILSKIDTTSTATQALVLAPTRELALQVAEAFSRYGAHLSRLNVLPVYGGS
SYAIQLAGLRRGAQVVVGTPGRVIDHLERRTLDLSRVDYLVLDEADEMLTMGFAEDVERI
LSETPEYKQVALFSATMPPAIRKITTRYLHDPLEVKSEAKTATAENISQRYIQVAGPRKM
DALTRVLEVEPFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTITALRD
GGIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALLFVSPRE
RHLLKLIEKATRQTLTEAELPTVEDVNAQRVAKFADSITHALSNTGIELFRRLVEDYERE
HNVPMADIAAALALQSRDGEEFLLAPDPPPDQRERHPRNERKERPERRRSGGAFSTYRIS
VGKRHKVGPGAIVGAIANEGGLHRSDFGHITIGPDFSLVELPVKLPRETLKKLEQTRISG
VLINLRPDRPADKAYKARRNDGGKPRRKRLG
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggccaaccccgaaaacccgcctgcggtaccccctgccaccttcgccgacctacagatt
catccgtcggtcatgcgagcaatcgccgacgtcggttacgagtccccgacggggattcag
gctgcgaccatccccgcgctgatggcgggttccgacgtggtggggctggcgcagaccggc
accggcaagacggcggcgttcgcgatcccgattctgtcgaaaatcgacaccaccagcacc
gcaacccaggcgctcgtgctggcccccacccgcgagctggcccttcaggtggctgaggcg
tttagtcggtacggcgcccatctatcgcgcctcaacgtgcttccggtttatggcgggtcg
tcgtatgccatacaactggccggtctgcggcgcggcgcgcaggttgtggtggggacaccc
gggcgggtcatcgaccacctggaacgacgaacgcttgatctgtcccgggtggactacttg
gtgctcgacgaggcagacgagatgctcaccatgggcttcgccgaagacgttgaacgcatc
ctgtccgaaaccccggaatacaagcaggtcgcattgttctcggcgaccatgccgccggca
atccgaaaaatcaccactagatatctgcacgatccgctggaagtcaaatccgaagcgaaa
accgctaccgccgaaaatatttcgcagcggtacatccaggtggccggtccgcgcaagatg
gatgcgcttacccgggtgctcgaggtcgagccgtttgaggcgatgatcgtgtttgtccgc
accaaacaggccaccgaggaggttgccgagaagctgcgggcacgcgggttttccgcggcg
gccatcaacggcgatattccgcagggacagcgcgagcgaaccatcacggcgctgcgcgac
ggcggcatcgacatcctggtcgccactgacgtggccgcgcgcgggctggacgtcgagcgg
atatcgcatgtgctcaactacgacatcccgcacgacaccgagtcctacgtgcaccgaatt
gggcgcaccggtcgggccgggcgttcgggtgcggcattgttgtttgtctccccgcgggag
cgacacctgctcaaactgatcgaaaaggccactcggcaaacgctgaccgaggccgagttg
cccaccgtggaagacgtcaacgctcagcgggtggcgaagtttgccgattccatcacccat
gcgctgagcaatacgggcatcgagttgttccgcaggctggtcgaggactacgagcgcgag
cacaacgtcccgatggctgacatcgctgcggcgctggcattgcagtcgcgcgacggcgag
gaattcctgctggcgcccgatccgccaccagatcagcgcgagcgccatccccgcaatgag
cgcaaggaacgtccggagaggcgcagaagcggcggcgccttcagcacgtatcgcatctcg
gttggcaaacggcacaaagtcggtccgggcgcgatcgtcggcgccatcgccaacgagggc
ggattgcaccgcagcgacttcggccacatcactatcgggccggatttctcgctggtggag
ctgccggtcaaactgccccgcgaaacactgaaaaagctcgaacaaaccaggatttcgggt
gtgttgatcaaccttcgccccgaccgcccagccgataaggcctacaaggcgcgccgcaac
gatggtggcaaaccgcggcggaaacgcctcggatga
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