Mycobacterium marinum M: MMAR_4465
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Entry
MMAR_4465 CDS
T00694
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor Mfd (TrcF)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mmi
Mycobacterium marinum M
Pathway
mmi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MMAR_4465 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmi03400
]
MMAR_4465 (mfd)
Enzymes [BR:
mmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MMAR_4465 (mfd)
DNA repair and recombination proteins [BR:
mmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MMAR_4465 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
Cas3-like_C_2
ResIII
UB2H
LSDAT_prok
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACC42872
UniProt:
B2HDI8
LinkDB
All DBs
Position
complement(5483622..5487290)
Genome browser
AA seq
1222 aa
AA seq
DB search
MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG
PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGARLLLLRRLAH
PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD
MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV
ACRELLLTEDVRARAAALAAQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD
HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGS
GFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVS
TGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN
LVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVG
GARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTKAR
KAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDMEK
SIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPV
TVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEH
KEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV
AAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQGFW
QREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP
QAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRL
VGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDRLRLEAYRRLAAATSD
SGVAAVVDELIDRYGALPEPALRLVAVARLRLLCRASGITDVSAPSSATVRLAPMDLPDS
AQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVTALAGKPQQDI
GRTSLSEDDAAATASGKERQAR
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccgggggctgctagcccagataccccgatcgcggggctcgtcgacttggcg
cttaccgcgccgactttccagcaactcatcgcgcgtgcctccgatcgccctgatgaattg
acgttggtcggcccggccagcgcgcgctccttcgtcgccagcgcactggcccaacaggga
ccgctgctcgtggtcaccgccaccgggcgtgaggccgacgacgtaaccgcggaactgcgg
ggagtcttcggcgaagccgtggcgttgttcccatcctgggagacccttccgcacgagcgg
ctctcacccggtgtcgacacggtcggtgcccggctgctgctgctgcgccggctggctcat
cccgaagacacccggctgggcccgccgttgcgtgtggtggtgaccgcggtgcgctcgcta
ttgcagccgatgacgccgcaactgggccggcaggaaccggtcagtctgagtgtcggacaa
gaaatcggcttcgatgaagtcatcgcccggctggtcgagctggcctacacccgggtcgac
atggtgggccggcgaggcgagttcgccgtccgcgggggcattctggacctcttcgcgccg
accgccgagcacccggtgcgggtcgaattctggggcgacgagatcaccgaaatgcgcatg
ttctcggtcgccgaccagcgctccattcccgagatcgaggtcagcacgctggtcgcggtg
gcctgccgggagctgcttctgactgaagacgtacgggcgcgagcggcggcgctggccgcc
cagcacccggcttcggagaacaccgtgaccggcagcgtcatcgacatgctggccaaactg
gccgagggcatcccgaccgatgggatggaagcgctgctgccggtgttgcgccccgatgac
catgcgctgttgaccgatcagcttgcagagggcactccggtgctggtgtgcgacccggag
aaggtgcgcacccgggccgccgatttgatcaagacgggccgcgaattcctcgaggcctca
tggtcggtcgcggcgatgggaaccgatgcgcccgtcgacgtcgaagccctgggtgggtcc
ggctttgccgagctggagcaggtgcagaccgcggcgagcagttccgggcacccgtggtgg
acgttgagccagctgtccgaggaatcggcgacggagctggaggtccgcgcggcgccctcg
gcgcgtgggcaccagaaggatatcgacgacatctttgcgatgctgcgcgcgcacgtctcg
accggcgggtacgcggtgatggtggagcccgggaccggcaccgcccatcgcatggtggag
cggctggccgaatccgacattcccgccgccatgctggaacccggcgccgcacccaagttg
ggcgtggtgggcgtgctcaaggggccgctgcgcgacggcgtcatcgtccccggcgccaac
ttggtcgtggtcaccgagacgaatctgaccggcaaccgggccacggcggtcgagggcaag
cgcctggcggccaagcggcgaaacaccgtcgatccactggccctgacggccggcgatctg
gtggtgcacgatcagcatggcatcggccggttcgtggagatggtcgagcgcaccgtcggg
ggtgcccggcgcgagtacctggtgctcgaatacgcctccgccaagcggggcggtggttcc
gacaagttgtatgtcccgatggattcgctggaccagttgtcgcgatatgtcggtgggcag
gcgccagcactgagccggctcggcggcagtgactggaccaacaccaagaccaaggcgcgc
aaggcggtgcgggaaatcgccggcgagctggtggcgctctacgccaagcggcaggccagc
cccgggcatgcgttcgcccctgacacaccgtggcaggccgagatggaggacgcgttcggt
ttcaccgaaaccgtcgaccagctcaccgcgatcaccgaggtcaagggcgacatggaaaag
tccatcccgatggaccgggtgatctgcggcgatgtcggctacggcaagaccgaaatcgcg
gtgcgggcggcgttcaaggccgttcaggacggcaaacaggttgccgtgctggtgcccacc
acgctgttggccgaccagcatctgcaaaccttcaccgaccggatggccgggttcccggtc
acggtcaagggtctgtcccgattcaccgaccccgccgagtcgcgcacggtgatcgagggc
atggccgacggatcggtcgacgtggtgatcggcacgcaccggctgctgcagaccggcgtg
cgctggaaagacctgggcttggtcgtggtcgacgaggaacagcggttcggtgtcgagcac
aaggagcacatcaagtcgttgcgcagccacgtcgacgtcttgacgatgagcgccaccccc
attccgcgcacgctggagatgagcctggccggtattcgggagatgtcgaccatcctgacg
ccccccgaggagcgctacccggtgctgacctacgtgggaccccatgacgacaagcaggtc
gccgcggcgctgcggcgcgagctgctgcgcgacgggcaggcgttctacgtgcacaaccgg
gtcagttccatcgacgacaccgccgcgcggattcgcaaactcgtgcccgaggcacgggtg
gtcgtcgcgcatgggcagatgcccgaggatctgctggaacgcacagtccagggattctgg
cagcgcgaattcgacatcttggtctgcaccacgatcgtggagaccggcttggacatctcc
aacgccaacacgctgatcgttgaacgggccgacaccttcgggttgtctcagctgcaccag
ctgcgcggccgagtgggccgtagtcgtgagcgcggttacgcctacttcttgtacccgccg
caggcgccgctgaccgagaccgcctacgaccggttggcgaccatcgcgcaaaacaacgag
cttggcgcgggcatggcggtcgcgctcaaggacctggagatccgcggtgcgggcaacgtg
ctcggcgtcgagcagtcggggcacgtcgccggagtcggcttcgacctctatgtgcggttg
gtgggcgaggccgtcgaggcgtatcgggcggccgccgacggcaagacggtgaccactccc
gaggagcccaaggatgtgcggatcgacctgccggtcgacgcccacctgccaccggactac
atcggcagcgatcgcctgcggttggaggcctaccggcggctcgccgccgcaacctccgac
agtggcgtcgcggccgtggtggacgaactcatcgaccgctacggggctttgccggagccg
gcactgcggctggtcgcggtggcgcggttgcggctgctgtgccgggcctcgggcatcacc
gacgtgtcggcgccgtcttcggcgacagttcggctggcaccgatggatctgcccgattcc
gcccaggtgcggctcaagcggatgtaccccggaggccactaccgggctacgacgtccacc
gtgcaggtacccatcccgcgtgacggtggcgtcggtgcgccgcgcatccgggatgtggaa
ttggtgcagatggtggccaatctggtgacggcattggcaggcaagccgcaacaagatatt
ggtagaaccagtttgtccgaagacgatgcggcggccaccgcgtcgggtaaggagcggcaa
gcgcgatga
DBGET
integrated database retrieval system
