Mycobacterium tuberculosis variant microti: RN08_1140
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Entry
RN08_1140 CDS
T04291
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mmic
Mycobacterium tuberculosis variant microti
Pathway
mmic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mmic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RN08_1140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmic03400
]
RN08_1140
Enzymes [BR:
mmic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RN08_1140
DNA repair and recombination proteins [BR:
mmic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RN08_1140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UvrB_inter
AAA_22
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AMC58567
LinkDB
All DBs
Position
1144135..1147224
Genome browser
AA seq
1029 aa
AA seq
DB search
MRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFACRELLLSEDVRARAAQLAARHPAA
ESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDGHALLTDQLPDGTPVLVCDPEKVRTR
AADLIRTGREFLEASWSVAALGTAENQAPVDVEQLGGSGFVELDQVRAAAARTGHPWWTL
SQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRAHIATGGYAALVAPGTGTAHRVVERL
SESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIPGANLVVITETDLTGSRVSAAEGKRL
AAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKN
TDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWANTKTKARRAVREIAGELVSLYAKRQA
SLGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEI
AVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVID
GLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSAT
PIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDHKQIAAALRRELLRDGQAFYVHN
RVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDI
SNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNN
ELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQ
TVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDREVAAVVDELTDRYG
ALPEPARRLAAVARLRLLCRGSGITDVTAASAATVRLSPLTLPDSAQVRLKRMYPGAHYR
ATTATVQVPIPRAGGLGAPRIRDVELVQMVADLITALAGKPRQHIGITNPSPPGEDGRGR
NTTIKERQP
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
gtgcgggtcgagttctggggcgacgagatcaccgagatgcggatgttctcggtagccgac
cagcgctcgattccggagatcgacattcacacactggttgccttcgcctgccgtgaactg
ctgctgagcgaggacgtgcgggcgcgggccgcccaactggccgcacggcatcccgcggcc
gagagcaccgtcaccggcagtgcttccgacatgctggcgaagctcgccgagggcatcgcg
gtcgacggcatggaggcggtgttgccggtgctctggtccgacgggcacgcgttgctgacc
gatcagctgcccgacggcacgccggtgttggtgtgcgacccggaaaaggtgcgcacccgc
gccgcggatctgatcaggactggccgtgaattcctggaagcctcgtggtcggtcgcggcg
ctgggaactgcagaaaatcaagcccccgtcgacgtcgaacaactgggtgggtcggggttc
gtcgaactggaccaggtgcgggccgcggcggcccgaacgggtcatccgtggtggacgttg
agccaattgtccgacgagtcggcgatcgagttggacgttcgggccgcgccgtcggcgcgc
gggcaccagcgtgacatcgacgaaatcttcgcgatgctacgtgcccacatcgcgaccggc
gggtacgccgcgctggtcgcgccgggcaccggaaccgcacaccgcgtggtggaacggctg
tccgagtccgacacccccgcggggatgctcgatcccggccaggcgcccaagccgggagtc
gtcggggtgctccagggcccgctgcgtgacggcgtcatcattcccggcgccaacctggtc
gtcatcaccgagaccgatttgaccggcagccgggtcagcgccgccgagggcaagcggctg
gcggccaagcggcgcaacatcgtcgacccgctggcgctgacggccggtgacctggtggtg
cacgatcagcacggcatcggccggttcgtggagatggtcgagcgcacggtcgggggcgcc
cgccgggagtatctggtgctggagtatgcctcggccaagaggggtggcggggcgaaaaat
actgacaagctctatgtcccgatggattcgctggaccagctgtcgcggtatgtcggcggg
caggcgccggcgctgagccggctgggcggcagcgactgggccaacaccaagaccaaggcg
cgccgcgcggtgcgcgagatcgcgggcgagctggtctcgctgtacgccaaacggcaggcc
agcctcgggcatgcgttctcgccggacacgccgtggcaggccgagctggaggacgcgttc
ggcttcaccgagaccgtggaccagctcaccgccatcgaagaggtcaaggcggacatggaa
aagccgatcccgatggaccgggtgatctgcggcgatgtcggctacggcaagaccgagatc
gcggtgcgggcggcgttcaaggcggtccaagacggtaaacaggtcgcggtgctggtgccc
accacgctgctggccgaccagcatctgcagacgttcggcgagcgaatgtccggattcccg
gtgaccatcaagggtctgtcgcggttcaccgacgccgccgagtcccgcgccgtgatcgac
ggcctggccgacgggtcggtggacatcgtgatcggcacccatcggctgctgcagaccggg
gtgcgctggaaggatctgggcctggtggtggtcgacgaggagcagcggttcggcgtcgag
cacaaggagcacatcaagtcactgcgcacccatgtcgacgtgctgaccatgagcgccacc
ccgatcccgcgcacgttggagatgagcctggccgggattcgcgagatgtcgaccatcctg
acgccgcccgaggagcgctacccggtgctgacctacgtcggaccgcacgaccacaagcag
atcgccgcggcgctgcgccgggagctgctgcgcgacgggcaggcgttctacgtgcacaac
cgggtcagctcgatcgacgcggccgccgcccgggtgcgtgagctggtgcccgaggcgcgg
gtggtggtcgcgcacgggcagatgcccgaggacctgttggagaccaccgtgcaacggttc
tggaaccgcgagcatgacatcctggtttgcaccaccatcgtggagaccggcctggacatc
tccaacgccaacactttgatcgtcgagcgcgccgataccttcgggctgtcccagctgcac
cagctgcgtggccgggtgggccgcagccgggagcgcggctacgcctatttcctctatcca
ccgcaggtgccgctgaccgagaccgcttacgaccggttggcgacgatcgcgcagaacaat
gagctgggcgcgggcatggccgtggcgttgaaggacctagagatccgcggtgccggcaac
gtgctcggcatcgagcagtccggacacgtcgccggcgtcggattcgacctgtacgtgcgg
ttggtcggcgaggccctggagacgtaccgggacgcgtaccgggcggccgccgacggccaa
accgtgaggaccgccgaagaacccaaggatgtgcgaatcgacctgcccgttgacgcgcac
ctgccaccggactacatcgccagtgatcggctgcggctggagggctaccggcggctggcg
gccgcctcctctgatcgcgaagtggcggccgttgtggacgagctaaccgatcggtatggg
gccctgccggagccggcccggcggctggcggcggtggcacggctgcggctgctgtgccgt
ggctccggcatcaccgacgtgacggcggcgtcggcagcgaccgtgcggctgtccccgttg
acgctgccggactccgcccaggtgcggctgaagcgaatgtatcccggagcgcactaccgt
gccacgacggccaccgtgcaggttcccattccgcgagccggtggcctcggcgcgccgcga
atccgcgacgtcgagctggttcagatggtggccgatttgataaccgcgctcgctgggaaa
ccgcgccagcatattggtataacgaaccctagcccgccaggcgaagacggccgtggtcgc
aacacgacgattaaggagcgacaaccgtga
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