Mycobacterium tuberculosis variant microti: RN08_3818
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Entry
RN08_3818 CDS
T04291
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
mmic
Mycobacterium tuberculosis variant microti
Pathway
mmic03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RN08_3818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmic03021
]
RN08_3818
03400 DNA repair and recombination proteins [BR:
mmic03400
]
RN08_3818
Enzymes [BR:
mmic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RN08_3818
Transcription machinery [BR:
mmic03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RN08_3818
DNA repair and recombination proteins [BR:
mmic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RN08_3818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
AMC61245
LinkDB
All DBs
Position
complement(3855664..3856707)
Genome browser
AA seq
347 aa
AA seq
DB search
MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA
TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK
LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgctgatctcacagcgccccaccctgtccgaggacgtcctcaccgacaaccgatcccag
ttcgtgatcgaaccgctggagccgggattcggctacaccctgggcaattcgctgcgtcgc
accctgctgtcgtcgattcccggagcggccgtcaccagcattcgcatcgatggtgtactg
cacgaattcaccacggtgcccggggtcaaagaagatgtcaccgagatcatcctgaatctc
aagagcctggtggtgtcctcggaggaggacgagccggtcaccatgtacctacgcaagcag
ggtccgggtgaggttaccgccggcgacatcgtgccgccggccggcgtcaccgtgcacaac
cccggcatgcacatcgccacgctgaacgataagggcaagctggaagtcgagctcgtcgtc
gagcgtggccgcggctatgtcccggcggtgcaaaaccgggcttcgggtgccgaaattggg
cgcattccagtcgattccatctactcaccggtgctcaaagtgacctacaaggtggacgcc
acccgggtcgagcagcgcaccgacttcgacaagctgatcctggacgtggagaccaagaat
tcaatcagcccgcgcgacgcgctggcgtcggctggcaagacgctggtcgagttgttcggc
ctggcacgggaactcaacgtcgaggccgaaggcatcgagatcgggccgtcgccggccgag
gccgatcacattgcgtcattcgccctgccgatcgacgacctggatctgacggtgcggtcc
tacaactgcctcaagcgcgagggggtgcacaccgtgggcgaactggtggcgcgcaccgaa
tccgacctgcttgacatccgcaacttcggtcagaagtccatcgacgaggtgaagatcaag
ctgcaccagctgggcctgtcactcaaggacagcccgccgagcttcgacccctcggaggtc
gcgggctacgacgtcgccaccggcacctggtcgaccgagggcgcgtacgacgagcaggac
tacgccgaaaccgaacagctttag
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