Methanobrevibacter millerae: sm9_0302
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Entry
sm9_0302 CDS
T04203
Symbol
rtcB
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mmil
Methanobrevibacter millerae
Brite
KEGG Orthology (KO) [BR:
mmil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mmil03016
]
sm9_0302 (rtcB)
Enzymes [BR:
mmil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
sm9_0302 (rtcB)
Transfer RNA biogenesis [BR:
mmil03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
sm9_0302 (rtcB)
Prokaryotic type
tRNA splicing ligases
sm9_0302 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ALT68104
UniProt:
A0A0U3E764
LinkDB
All DBs
Position
412645..414093
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AA seq
482 aa
AA seq
DB search
MTIKDEIKKIRDNVYEIPGSYNKQMRASGRLYIDDESFEALEEGAVQQIVNVACLPGVFR
YSIGLPDIHFGYGFPIGGVAAFNMRNGIVSPGGVGFDINCGVRLIKSNLCQEDIEGHLDE
LVDALFKNIPSGVGSKGKVKLSQDDINNVLDYGAEWAVENGYGWDEDLEVLEENGRIKAA
DSSEVSDKAKKRGIPQLGSLGSGNHFLEIQVVDEIYNEEVADVYGLKKGMIVIMVHTGSR
GCGHQVCSDYLRLMDKAYKNYKINIADRQLACAPLDSKEAQSYLKAMYAAANYAWANRQM
ITHWIRESFEDVLGKSARDMDMQIVYDVAHNIAKEETHDFKGRDMEVLVHRKGATRAFGP
GREEVPVKYRDVGQPVLIPGTMGTASYVLHGTQTAMEETFGSTAHGAGRVLSRSQAKKDY
NPEDIVNNMENNGIKVKATSKSVIAEEAPGAYKDVDSVVRVSDSTGIAKLVAKVKPLAVT
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgactatcaaagatgaaattaaaaaaattagagataatgtttatgaaattccgggaagc
tataacaagcagatgagggcttccggaaggttatatattgatgatgaaagctttgaagca
cttgaagaaggtgcagtccagcaaatcgttaatgttgcatgcttgcctggtgtattcaga
tactctatcggattgcctgatattcactttggatacggattcccaataggcggagttgca
gcattcaacatgagaaacggtattgtatctccgggtggtgtcggttttgacattaactgt
ggtgtcagattaatcaaatccaatttgtgccaagaagatattgaaggccatttggatgaa
cttgtggatgctttgtttaaaaacattccgtcaggtgtcgggtctaaaggaaaagtaaaa
ttatcccaggacgacattaacaatgttttggattacggtgccgaatgggctgtcgaaaac
ggctacggatgggatgaggatttggaagttttagaagaaaacggaagaatcaaagcggct
gattcatctgaagtcagtgacaaggctaaaaaaagaggaattccacaactcggatctctt
ggttcaggtaatcatttccttgaaattcaggtcgttgatgaaatctacaacgaagaggtg
gctgatgtttatggcttgaaaaagggaatgattgttattatggttcacacaggttcccgt
ggatgcggacaccaggtgtgttcagattatttgagattaatggataaggcttataaaaat
tataaaatcaacattgcagacagacaacttgcttgtgctcctcttgactctaaagaagct
caaagctatttaaaagcaatgtatgctgcagcgaattatgcatgggcaaacaggcaaatg
attactcattggattcgtgaatcatttgaagatgtcttaggcaaatctgcccgcgatatg
gacatgcaaatagtttatgatgtagctcacaacatcgctaaagaggaaacccatgacttc
aagggaagagatatggaagttcttgttcacagaaaaggagcaacccgtgcattcgggcct
ggccgtgaagaggttccggtcaaataccgtgatgtcggccagcctgtattgattccggga
actatgggaacagcatcatatgtattgcacggaacacaaactgcaatggaagaaacattt
ggttctactgctcatggggcaggaagggtactgtcacgttcacaggctaaaaaggattac
aatcctgaagatatagtgaataatatggaaaacaatggaattaaggtaaaggcaacatca
aaaagtgtcattgctgaagaggcacctggtgcatataaggatgttgacagtgtagttcgc
gtatctgactcaacaggaattgcaaaacttgtagctaaagtaaaacctttagccgttaca
aaagggtag
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