KEGG   Methanobrevibacter millerae: sm9_0326
Entry
sm9_0326          CDS       T04203                                 
Symbol
dnlI
Name
(GenBank) ATP-dependent DNA ligase DnlI
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mmil  Methanobrevibacter millerae
Pathway
mmil03030  DNA replication
mmil03410  Base excision repair
mmil03420  Nucleotide excision repair
mmil03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mmil00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    sm9_0326 (dnlI)
   03410 Base excision repair
    sm9_0326 (dnlI)
   03420 Nucleotide excision repair
    sm9_0326 (dnlI)
   03430 Mismatch repair
    sm9_0326 (dnlI)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mmil03032]
    sm9_0326 (dnlI)
   03400 DNA repair and recombination proteins [BR:mmil03400]
    sm9_0326 (dnlI)
Enzymes [BR:mmil01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     sm9_0326 (dnlI)
    6.5.1.6  DNA ligase (ATP or NAD+)
     sm9_0326 (dnlI)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     sm9_0326 (dnlI)
DNA replication proteins [BR:mmil03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    sm9_0326 (dnlI)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     sm9_0326 (dnlI)
DNA repair and recombination proteins [BR:mmil03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     sm9_0326 (dnlI)
   NER (nucleotide excision repair)
    Other NER factors
     sm9_0326 (dnlI)
   MMR (mismatch excision repair)
    Other MMR factors
     sm9_0326 (dnlI)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase PreP_C
Other DBs
NCBI-ProteinID: ALT68128
UniProt: A0A0U3E5C5
LinkDB
Position
complement(443294..444949)
AA seq 551 aa
MKYQELVDVYSALEATTKRLEKTDIIAEYLKKLDADTIGKVGLLLLGGVFPAWSSEEIGI
GAKLVERAVAEAVGTTQAKVEDAVRDEGDIGLACIKLYSKKSQMTFFSQPLTINFVFDSL
QKLSKISGSRSTNRKISIILELLSQASATEAKYLTRTITEELRIGVGDGIVRDAIAQAFD
IDKKVVERAQMLTNDFSVVARTALLEGASGLSRLNLTPGTPVKPMLAQLSLPVAEIIPEM
GTAICETKYDGIRLQVHRNGNEIRIFTRRLENITHALPEIVELFDEYLPHDDYIVEGEVI
ATRDGKPLPFQNILHRVRRKYNVEEAMENVPLKLYLFDVLYYKEPMIDEPLMTRRETLEN
IVDTSVDEMNLSTMIIGTPDNIDEIEELFNSSIAAHHEGIMIKDASEPYIPGIRGKKMLK
YKAEPETLDMIIVGGTYGIGKRGDFVGSYLVALRDENDEFKTVAYAATGLDDATLEYLTG
KMKEIEITTKGREIVVEPKIVLEIAFSEIVESPEYETGYSLRFPVVKNIRKDKGPMDVDT
VERLLSMYKAQ
NT seq 1656 nt   +upstreamnt  +downstreamnt
atgaaatatcaggaattagtagatgtttattctgctttagaggcaacgaccaaacgttta
gaaaaaacagatattattgcagaatatcttaaaaaattggatgctgataccattggaaaa
gttggattgttactcttgggaggagtttttccggcatggagttcagaagaaattggtatt
ggtgcaaaacttgttgaaagagctgttgcagaagctgttggaaccacacaggcaaaagtt
gaagatgcagttcgagatgaaggagacattggtcttgcatgcataaaattgtactctaaa
aagtcccagatgactttcttttcacagccattaaccattaatttcgtatttgatagcttg
cagaaactgtcaaagataagcggttcaaggtctactaatcgtaaaatttcaatcatttta
gaattattatcacaggcttcagctactgaagcaaaatacttgaccagaacaattactgaa
gagttgaggattggcgttggtgacggcatagtccgtgatgcaatagcacaggcttttgat
attgataaaaaagtcgttgaaagagctcaaatgctaaccaatgatttttcagttgtagca
agaactgcccttttggaaggtgcaagtggattatcaagacttaacttgactccaggaaca
cctgttaaaccaatgcttgcccaattatcactgcctgttgcagaaatcattcctgaaatg
ggtactgcaatctgtgagacaaaatatgacggaattcgccttcaggttcacagaaacggt
aatgaaatcagaatatttacacgaagactggaaaatatcacacatgcccttccggaaatc
gtcgaactgtttgatgaatatcttccccatgacgactatatcgttgagggagaagttatt
gctacaagagacggcaaacctttaccattccagaatattttacatagggtgaggcgtaaa
tacaatgttgaagaagcaatggaaaatgttccattgaaattatacctatttgatgtatta
tactataaggagccaatgattgatgagccgttaatgacaagaagagaaaccttagaaaat
attgtcgatacatcagttgatgaaatgaacctaagcacgatgattatcggaacacctgac
aacattgatgaaatagaagaactattcaattcatccattgccgcccaccacgaaggaatc
atgattaaagatgcatcagaaccatacattccaggaattagaggcaaaaaaatgcttaag
tataaagcagagcctgaaacattagatatgataattgtcggcggaacatatggtatcggc
aaaagaggggattttgtagggtcttaccttgtggcacttagggatgaaaatgacgagttt
aaaactgtagcttatgctgcaaccggtcttgatgatgctactttggagtatttgaccggg
aaaatgaaggaaattgaaataacaacaaaaggccgtgaaattgttgttgaaccaaaaatt
gttttagaaattgctttttctgaaattgtcgaatctccagaatatgaaaccggctactct
ttaaggttccctgttgttaaaaatataagaaaagataagggacctatggatgttgacaca
gttgaaagactgctttcaatgtataaagcacaataa

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