Methanobrevibacter millerae: sm9_0813
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Entry
sm9_0813 CDS
T04203
Name
(GenBank) exosome complex RNA-binding protein Rrp42
KO
K12589
exosome complex component RRP42
Organism
mmil
Methanobrevibacter millerae
Pathway
mmil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
sm9_0813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmil03019
]
sm9_0813
Messenger RNA biogenesis [BR:
mmil03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
sm9_0813
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
sm9_0813
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
ALT68604
UniProt:
A0A0U3CJ98
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All DBs
Position
928455..929240
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AA seq
261 aa
AA seq
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MDIVPEITRESITNLIINDKREDGRALDEYRDISIETDVISKAEGSARVKIGGTQVLVGI
KPQLGSPFPDTPDLGVLMTNCEMLPMADPTFEPGPPSEDSIELARVVDRGIRESELVELD
KLCVEEGKHVWMLFIDLHVIDNCGNLFDAAELAVMAALKSTKLPTASIVDDEVVLDKENT
FDLPINNEVAMCTFVKIGEKMVLDPSLSEERVASARLNVGVTKEGRICAMQKGGAQPLTK
DEIFAAVNIAVSKTKELVEYL
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atggatatagtaccggaaattacaagagaaagtattacaaacctcatcatcaacgataaa
agggaagatggtagggcacttgatgaatatagggatatttctattgaaactgatgttatt
tctaaagctgaaggttctgcaagagtaaaaatcggtggaactcaagttctcgtaggtatt
aaacctcaacttggaagtccatttccagacactcctgatttaggagtattaatgactaat
tgtgaaatgctgccaatggctgatccaacttttgaaccaggaccacctagtgaagattcc
attgaacttgcacgtgttgttgataggggaattcgtgaaagtgaattggttgaattggat
aaactctgtgttgaagagggtaaacatgtttggatgttgttcattgatttgcatgtaatt
gataactgtggaaatctctttgatgctgcagagcttgctgttatggctgcacttaaaagt
acaaaattacctactgcatcaattgtcgatgatgaagttgttcttgataaggaaaataca
tttgatttaccaattaacaatgaagtagcaatgtgtacatttgttaaaattggtgaaaaa
atggttttagatccttcattatctgaagaacgtgttgctagtgctcgtttaaatgttggt
gttactaaagaaggtagaatctgtgctatgcaaaaaggtggagcacaaccattaactaaa
gatgaaatatttgctgctgtaaatatagcagtttcaaaaacaaaagaattagtcgaatat
ctttaa
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