KEGG   Methanobrevibacter millerae: sm9_2254
Entry
sm9_2254          CDS       T04203                                 
Name
(GenBank) replication factor A
  KO
K07466  replication factor A1
Organism
mmil  Methanobrevibacter millerae
Pathway
mmil03030  DNA replication
mmil03420  Nucleotide excision repair
mmil03430  Mismatch repair
mmil03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:mmil00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    sm9_2254
   03420 Nucleotide excision repair
    sm9_2254
   03430 Mismatch repair
    sm9_2254
   03440 Homologous recombination
    sm9_2254
   03460 Fanconi anemia pathway
    sm9_2254
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mmil03000]
    sm9_2254
   03032 DNA replication proteins [BR:mmil03032]
    sm9_2254
   03400 DNA repair and recombination proteins [BR:mmil03400]
    sm9_2254
Transcription factors [BR:mmil03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    sm9_2254
DNA replication proteins [BR:mmil03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    sm9_2254
DNA repair and recombination proteins [BR:mmil03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     sm9_2254
   MMR (mismatch excision repair)
     sm9_2254
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     sm9_2254
SSDB
Motif
Pfam: tRNA_anti-codon REPA_OB_2 CDC24_OB3 Rep_fac-A_C OB_MEIOB_N SHLD2_OB1 HIN DUF5088
Other DBs
NCBI-ProteinID: ALT70010
UniProt: A0A0U3DVJ2
LinkDB
Position
complement(2458600..2461209)
AA seq 869 aa
MEKEILEQYNKVKDILSEEEFLNEIEQIRPNFEDLPFMDEVDIAKEVVKNHIGAADISKS
EDSIDDADSSFEKVVMTNELLEKYNQIKDYMSEDEFLDEMNKLKKENSDVSFMNEETFAD
QIVGRYVESENEILTEREEYSSDNIGLLEDGDKDKSFTGVVKTISNPRSFKTRKGNSGKV
CNVDVEDKTGKIRVVLWTENIKHLKNISEGDIVHVGGVDIKDGYSGLEASMRPRSVFEKA
VDADPSDYPTYTEEITPIKDVQANTTVNVIARITRIPPVRTYNKNGKDGKVASLELQDAS
GTISYTLWNNNVDLIQSLELNDGDTVKILQAQVRERNDEKSLSHWDGRIIKGDFDVPEFE
HEVSKIGDLDDGDSDISIIGVVTKLQDIRKFIRKSDKSEGQLRNFNITDDTGSIRVTLWG
ESADIEIKKGDIVKLIGGTVVYDEYTEEGHSINTNFSTQISVNPKNLSEDDELIFNNIKE
KLQPMQIEQVVLGDEENIDVDVMGRIMSVGDIRTFERPSDGSQGKVRSASFSDGTEVIQL
SLWDDKTNVDLDVGNAYLLENARVRFSMDSISLNIGSSSRVISLSEDQAKFLPSFETLEK
MIYEYREISDLDEYDENIYVVGRIFEVFDVRELERDDGSKYLLRNIEIADNSQAIRVSLW
GENAKREFDEGEAIKIQNPRIDLYNDQLTLNIAESTAIVKPSDEELMNLPSFDELKEAIY
VPKEIEAIEDNDVNVRVTGTLQDIVSERLLLRKCPHCSNTIGDVELDGETMCDFCGETFD
EPRTTLMIPTTLVDDTGDIGVTFFDNLVEDLLEMPREEIINIVTDDPGALDGRIEDLEGL
TVEIIANVSYDEYNEVRKLNPRKILQKYY
NT seq 2610 nt   +upstreamnt  +downstreamnt
atggaaaaagaaattttagaacaatacaataaagtcaaagatatactctctgaagaagaa
tttttaaatgaaatagagcaaattcgtccaaattttgaagatttgccttttatggatgag
gtagacattgcaaaagaagttgttaagaatcatattggtgcagctgatatttcaaaatct
gaagattctattgatgatgcagattcttcatttgaaaaagttgtaatgactaacgaactt
ttagaaaaatataatcagattaaagattatatgagtgaagatgaatttttggatgaaatg
aataaactcaaaaaagaaaattcagatgtatcttttatgaatgaagaaactttcgctgat
caaattgttggcagatatgttgaaagcgaaaacgaaattttaaccgaaagggaagaatat
tccagcgacaatattggattactggaagatggtgataaagacaaatctttcactggtgtt
gttaaaacaatcagcaatccaagatcatttaaaacacgtaaaggaaactctggaaaagtg
tgtaatgttgatgttgaagataaaacaggaaaaattcgtgttgtcctatggacagaaaac
atcaaacatttaaaaaatatttctgaaggagatattgtccatgttggtggagttgatatt
aaagatggttattctggtcttgaagcttcaatgagacctagatctgtttttgaaaaagca
gttgatgctgatccttcagattatccaacatatactgaagaaattactccaatcaaagat
gttcaggccaatacaacagtaaatgttattgcaagaattactagaattcctcctgttaga
acatataataagaatggtaaggatggaaaagttgcatcattggaacttcaggatgcatct
ggaacaatctcatatactttatggaataataatgttgatttaattcaatctcttgaatta
aacgatggcgataccgtaaaaattcttcaagctcaagtaagagaaagaaacgatgaaaaa
tctttaagtcattgggatggaagaataattaaaggggactttgatgttccagaatttgag
catgaggtttcaaaaatcggtgatttggatgacggagacagtgatatttcaataattggt
gttgtaactaagttgcaggatatcagaaaattcattagaaaatctgataaaagtgaaggc
caattaagaaatttcaatattacagatgatactgggtccattagggtcactttatgggga
gaaagtgcagatattgaaattaaaaaaggagatattgtaaaattaattggtggaactgtt
gtctatgatgaatatactgaagagggtcattctattaatacaaatttctcaactcaaata
tctgtcaatcctaaaaacttatcagaagatgatgaattaattttcaacaatatcaaagag
aaattacagccaatgcaaatcgaacaagttgtattgggtgatgaagagaatattgatgtt
gatgtaatgggtaggataatgtctgtcggcgatataaggacttttgaaagaccatccgat
ggttctcaaggtaaagttcgttcagcatcattttctgatggtactgaagtaattcaatta
tcattatgggatgacaaaaccaatgttgatttggatgttggaaatgcatatctgcttgaa
aatgcaagagtaagatttagcatggattcaattagtttaaacattggctcatcttcaaga
gttattagtttatcagaagatcaagctaaatttttaccatcattcgagacattagaaaaa
atgatttatgaatatcgtgaaatttcagatttagacgaatatgatgaaaatatttatgtt
gttggaagaatctttgaggtatttgatgttcgtgaattagaaagagatgacggtagtaaa
tacttactaagaaatatagaaattgctgataattctcaagctatcagagtatcattgtgg
ggagaaaatgctaaaagagaatttgatgaaggagaagctattaaaattcaaaatcctagg
atagatttatataatgaccaattgactttaaatattgctgaatctactgctattgttaaa
ccaagcgatgaagagttaatgaacttaccttcatttgatgaactcaaagaagcaatttat
gttccaaaagaaattgaagcaatagaagataatgatgttaacgttcgtgttaccggaact
cttcaggatattgtctctgaaagattacttctcagaaaatgtccgcattgttctaatact
attggtgatgttgaacttgatggagaaacaatgtgtgatttctgtggtgaaacatttgat
gaaccaagaaccactcttatgattccaacaactttagttgatgatactggtgatataggt
gttacattctttgataatttagttgaagatttattagaaatgcctagggaagaaattatc
aatatagttactgatgatcctggagctttagatggaagaattgaagacttagaaggtctc
actgtagaaattattgcaaatgttagctatgatgaatataatgaagttagaaaactcaac
ccaagaaaaattttacaaaaatattactaa

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