Micromys minutus (European harvest mouse): 308425941
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Entry
308425941 CDS
T12044
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
mmiu
Micromys minutus (European harvest mouse)
Pathway
mmiu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmiu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
308425941 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mmiu03041
]
308425941 (DDX42)
Enzymes [BR:
mmiu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
308425941 (DDX42)
Spliceosome [BR:
mmiu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
308425941 (DDX42)
Complex B
308425941 (DDX42)
Complex C
U2 SnRNP specific factors
308425941 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
308425941
NCBI-ProteinID:
XP_080779714
LinkDB
All DBs
Position
10:52184027..52213417
Genome browser
AA seq
929 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEAKLPQQSHSAFGAGSSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGTSTAGASGWTSAGSLNSVPTNSAQQGHNSSDNPITSSTKNVPGFNSSGNISSAPVTY
PSIGAQGVNSTASGSNSREGIGGGNGKRERYTENRGGGRHSHGDGGNRHGDGGRHGDGYR
YPEGSSRHTDGHRHGETRHGGSASRHGESRGANDGRNGESRKEGFNRENKMDPKVDSSRM
DKVDSKTDKTPDGFAVPEPPKRKKSRWDS
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggcggacctggaaccaagcggggatttggctttggaggttttgcc
atcagtgctgggaagaaggaggaagccaaactgccacagcagtcccacagtgcctttggg
gcaggcagctcttcttctggatttggaaagtctgctccaccacagcttccttctttctac
aaaattggatctaaacgggccaactttgatgaagaaaatgcgtattttgaagatgaagaa
gaagactccagcaatgtagatttaccttacattcctgctgaaaactcacctacccgccag
cagttccattccaagccagcagactctgacagtgatgatgaccccttagaggcattcatg
gctgaagtagaggatcaggctgctagagatatgaagagacttgaagaaaaggacaaggaa
agaaaaaatgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgatacatggcagaaaacccaactgctggggtggttcaggaggaagaggaagacaat
ctggaatatgatagtgatggaaatccaattgcaccttccaaaaaaattatcgatcccctt
cctcccattgatcattcagagattgactatccaccatttgaaaaaaatttttacaatgaa
catgaggagataaccaacctcactccacagcagttaatagacctgcggcataaactcaac
cttcgggtctctggtgctgcacctcctagaccaggaagcagttttgctcattttgggttt
gatgaacaacttatgcatcagattaggaaatctgagtatacacagccaactccaatacag
tgtcagggtgtgcctgtagcactcagtggtagagacatgattggtattgctaaaacaggc
agtgggaaaactgcagcctttatttggcccatgttgattcatataatggatcagaaggaa
ttggaaccaggtgatggaccaattgccgtgattgtgtgtcctactagggagctttgtcaa
cagatccacgcagaatgtaagcggtttgggaaagcgtataatcttcgctcagtggcagta
tatggaggagggagcatgtgggagcaggccaaagcccttcaggaaggggcagagattgtt
gtgtgtacgccaggtcgattgattgatcatgtaaagaaaaaagctactaatcttcaaaga
gtctcttacctggtgtttgatgaagctgatcgaatgtttgacatgggatttgagtatcag
gttcggtccatagcaagtcatgttcgtcctgacagacaaactctcttattcagtgcaact
tttcggaaaaagattgaaaagttggccagagacatcttgattgaccctattcgagtggta
cagggagacattggagaggcaaacgaagatgtaacacagattgtggagatactccattct
ggacctagtaaatggaactggcttactcggcgtctggtagagtttacctcttcaggaagt
gtcctcttgtttgttactaagaaagccaatgcagaagaactagccaataaccttaagcag
gagggtcataatcttggtctgctccatggggacatggatcagagtgaaagaaacaaggtc
atttcagattttaagaaaaaggacatccccatcctggtggccacagatgttgcagcccgt
ggtctggatattccttcaattaagacagtcattaactatgatgtagcacgagacattgat
acccatactcataggattggccgaacaggaagagctggtgagaagggtgtagcctatacc
ttactgaccccaaaggacagcaattttgctggtgaccttgtgcggaacctggaaggagcc
aaccaacatgtttctaaggaactcttggatctcgcaatgcagaatgcctggtttcgcaaa
tcgcgcttcaaaggagggaagggcaaaaagctgaacattggtggaggaggcttgggctat
agagagcgacctggactaggctctgagaattcggatcgaggaaataacaacaatgtaatg
agcaattatgaagcctacaagccctccacaggagccatgggagataggctgacagcaatg
aaagcagcttttcagtcccagtacaagagtcactttgttgcagccagtttaagtaatcag
aaggccggaacttctactgctggggcaagtggatggactagtgcaggaagcttaaattcc
gttccaactaattcagcacagcagggccataacagttctgacaaccccatcaccagttct
accaagaacgtgccaggcttcaacagttctgggaatatcagtagtgccccagtgacctac
ccttctattggagcccaaggagtcaacagcacagcttcagggagtaacagccgtgaaggg
attgggggtggcaatgggaagagagagagatatactgagaaccggggtggtggccgtcat
agccatggagacggtggcaatcggcatggagatggtggccgccacggagatggataccgt
tacccagaaggtagtagccgtcatactgatggccaccggcatggtgagaccaggcatgga
ggaagtgccagcagacatggagagagccggggtgcaaacgatggcaggaatggagaaagc
aggaaagaaggctttaatcgtgaaaacaagatggaccccaaggtggacagcagtaggatg
gacaaagtggacagcaagacagataagacacctgatggctttgccgttccagagccaccc
aaacgcaagaaaagccgatgggatagttag
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