Micromys minutus (European harvest mouse): 308427120
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Entry
308427120 CDS
T12044
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
mmiu Micromys minutus (European harvest mouse)
Pathway
mmiu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
308427120 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmiu03019
]
308427120 (SKIC3)
Messenger RNA biogenesis [BR:
mmiu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
308427120 (SKIC3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_14
TPR_8
TPR_16
TPR_12
TPR_17
TPR_CcmH_CycH
TPR_11
CFAP70_TPR_C
CFAP70_mid_TPR
TPR_9
TPR_INTS8_3
TPR_7
TTC22_N
ARM_TT21_C
Sel1
ANAPC3
ARM_TT21_2nd
TPR_5
TPR_15
CABIN1_N
Fis1_TPR_C
BTAD
TPR_30
TPR_6
TPR_20
Motif
Other DBs
NCBI-GeneID:
308427120
NCBI-ProteinID:
XP_080781258
LinkDB
All DBs
Position
11:1242982..1329452
Genome browser
AA seq
1563 aa
AA seq
DB search
MSSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
GAYKKAAELEPEQLLAWQGLASLYEKCNHINAKDDLPAVYQKLLDLYESVDKQKWCEVCK
KLVDLYHQDKKHLEVARTWCRLIKTRQEDGADRQELYELWKKLSQLLAESTEDQNNETQQ
MLLTAFENALDLADNIPSEDHQILYRNFIQCLSKFPHETARLKKACEGMITVYPAVQYPL
EVICLYLIDSGNLTDEGHQYCCKLVEMNSKSGPGLIGLGIRALQDKKYEDAVSHLTEGLK
ESPLCIAGWCHLAEAQVKMHRPKEAILSCNQALKTIDNLGTSGSSLYQKNLCLRLKAEAL
LKLSDCASSEEAVRTLDQVSDAENTPGLLVLQGLAHLNTGAVDKATKIMEDLVASYPDLA
AAHALEAQVHFTKKDYVQAEISFQKALEKDAEVAEYHYQLGLTYWFMGEETRKDKTKALT
HFLKAARLDAHMGKVFCYLGHYYRDVSGDKSRARGCYRKAFELDDSDAESGAAAVDLSVE
LEDMETALAILTAVTQKASAGAAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDCNC
WESLGEAYLSRGGYTTALKSFTRASELSPDPTYSVFKVAAIQQILGRYSEAIAQYQLIIK
TKEDYVPALKGLGECHLMLGKAALVDFLDGKAVDYVEQALEYFTRALQHRADVSCLWKLV
GDACTCLHPVSPSKVHVRVLGALLGQQEGQEVLKKDELLHLGGRCYGRALKLMSTSNTWC
DLGINYYRQAQHLAETGSSMNDLTELLEKSLHCLKKAVRLDSNNHLYWNALGVVACYPGV
GNYALAQHCFIKSIQAEQINAAAWTNLGVLYLATENIEQAHEAFKMAQSLDPSYLLCWIG
QALIAERVGSYDTMDLFRHTTELSMHTEGAIGYAYWVCTTLQDKSNRDTELYQYNILQMN
AVPAAQGVLCKYVERIQNYSPAFTMLGYLNEHLQLKREAAEAYQRATVLLDSAEDQHTYN
ITVRNWGRLLCSIGDYDKAIQAFKSTPLAELEDILGFALALFMKGLYKESSTAYERALAV
CKSEQDKAHILTAMAITEYKQGKMDAAKSLLFKCSILKEPTAESLQALCALGLAMQDATL
SKAALNELLKHVKHQNHYHRCLLTAAVSALQGRSVAVQRQVAKAVHSNPADPALWSLLSR
IVAQYTQRNAKGGAVAGQVAHTLDSNQGKKALLYTAVNQLAQGSSPAEDESNAALKTIQK
AAFLSPDDPAVWAVLMAACHADNKLALVSNTQPKRVDLYLALQSAVSASLKDKEILQNYN
QSLERWSFSQAVTGLIDTGKIPEAESLCTKNLKSNPDQPAIILLLRQVQCTSLLASQKPL
PDAVLEELQKTVLSNSTSVPAWQWLAQVYQSQGMMGAAEMCYRKSLQVASQQGSWSGKLS
SLLKLALLALEVCMANVSGDHWSSLVQEATSEALKVCFSPLAVFLQALLQFNRKMGARET
RRLLERVVYQTGYPNSIVSAARWYLLRHLYAKDDHELIDVLVRNAETHGDKRMLELNQKL
SAQ
NT seq
4692 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtaaagaagtgaagactgctctaaaaagtgcaagagatgcaatcagaaacaaa
gagtacaaagaagccttgaaacattgcaagacagtgttaaaacaagagaaaaataactat
aatgcctgggtttttattggtgttgctgcagctgaactagaacagcctgatcaggcccag
ggcgcctataagaaagccgctgaactagaaccagagcagctactcgcttggcaggggcta
gcaagtttgtatgagaagtgtaatcacataaatgccaaggatgacttacctgctgtttac
caaaagctgttggatctctatgaaagtgttgacaaacagaagtggtgtgaagtgtgtaag
aaacttgtggatctctatcaccaggacaagaaacacctagaggtggcccggacatggtgt
agactgataaagacacggcaggaagatggagcggacagacaggagctttatgagttgtgg
aaaaaattgagtcagctgctggctgagagcacagaagatcagaataatgagacccagcag
atgcttttaactgcatttgagaatgcactggacttagcagataatattcccagtgaagat
caccaaatactttacaggaatttcattcagtgtttgtctaagtttcctcatgagacggct
cggttgaagaaggcctgtgaaggaatgataactgtgtatcctgctgtacagtacccactg
gaagtgatttgtctgtacctaattgactcaggcaacctgacagatgagggacaccagtat
tgttgtaagctagtggaaatgaattcaaaaagtggtccaggccttattggcttaggcatc
agagctttacaagacaagaagtatgaagatgctgttagtcatctaacagaaggtttgaag
gaaagccctctctgcatagctgggtggtgtcatctagcagaagcccaagtcaaaatgcac
agacctaaggaagctattctttcttgcaatcaagctctcaagaccatagataatcttggt
acgtcgggtagtagtctttatcagaagaatctttgtcttcgactgaaagcagaggctttg
ctgaaactctcggattgtgcatcttcggaggaggcagttcgtacccttgatcaggtttct
gatgccgagaataccccaggactactggttctccaaggcctggcccatctgaacaccggc
gctgtagacaaggctacaaagatcatggaagatcttgtagcctcttaccctgatctagct
gcggctcatgctcttgaggctcaggttcattttactaagaaggactatgtgcaagcagaa
ataagtttccagaaagcacttgagaaagatgctgaagttgctgaatatcattaccagctt
gggctgacatactggttcatgggtgaagaaacaagaaaggacaaaacaaaggctctcacc
cactttctgaaggctgcgagactggatgcacacatgggtaaagttttctgctacttaggc
cattattaccgagatgtgtctggagataaaagcagagcccgggggtgttacaggaaagcg
tttgaattagacgacagtgatgctgagtctggagctgccgcagttgacctgagtgtggag
cttgaagacatggaaactgctttagctatcttgacggcagtaactcagaaggcaagtgcc
ggagcagcaaagtgggcgtggctgaggcgaggactgtactatttgaaagctggtcaacat
tctcaagcagtggctgatttacaggcagcactaagggccgaccccaaggactgcaattgc
tgggagtcattaggagaagcgtacttaagcagaggtggttacaccacagccttgaagtcc
ttcacaagagccagtgagctcagcccagatcccacgtacagcgtgtttaaagtagcagca
atacagcaaatcctaggcagatattcggaggccattgcacagtatcagctgatcattaaa
accaaagaagattatgtgcctgccttaaaaggtttgggtgaatgccatctgatgctgggg
aaggcggccttagtggattttctggacggaaaagctgtggactatgtggagcaagcactg
gaatatttcacccgggctctgcagcatcgagctgatgtatcttgcctttggaagctcgtg
ggggatgcctgtacctgtctgcaccctgtttcgccatctaaagtgcatgttcgtgtctta
ggagcccttcttggccagcaagaaggacaggaagtcttaaagaaagatgaactcctgcat
cttggaggaaggtgttatggtcgtgcattaaaattgatgtctacatctaatacatggtgt
gatcttggaattaattattaccgtcaagcacagcatctagcagaaacaggcagcagtatg
aatgatcttactgagttactggagaaatctttgcactgtctgaaaaaggcagtgaggctg
gacagtaataatcacttatactggaacgctcttggtgtggttgcgtgttaccctggagtt
ggaaattatgcccttgctcagcactgtttcatcaaatcaatccaggcggaacaaattaat
gctgctgcgtggaccaacttaggagtgttataccttgcaactgaaaacatcgagcaagcc
catgaagcgttcaaaatggctcagtcccttgatccgtcttatttattgtgctggattgga
caggctcttattgcagagagagttggaagttatgataccatggatctcttcaggcacact
acagagctcagtatgcatactgaaggagcaataggttatgcttattgggtttgtacaaca
ttgcaagacaaaagcaacagagacacagagctgtatcagtacaacatcctccagatgaat
gctgtccctgcagcgcaaggcgtcctgtgtaaatatgtagaaagaattcagaattactct
ccagcattcacaatgttgggttatttaaacgagcatctacagttgaaaagggaagcggcc
gaggcgtaccaaagggcaactgtactgttagattctgctgaagaccaacatacttacaat
attacagtaagaaactggggcagactgttatgctccattggtgactacgacaaagctatc
caggcctttaagtcaacgccccttgctgagctagaggacatcctagggtttgcgctggcc
ttgttcatgaagggtctgtataaggagagcagcacagcctatgagagagccttggctgtt
tgtaagtcagagcaagacaaagctcacattctgacagctatggcaataacagaatataaa
caaggaaaaatggatgcagccaagtcattactcttcaaatgctctattttaaaggaacca
actgcagagagtctccaagcactgtgtgctctagggctggcaatgcaggatgccacactc
tcaaaagcagcactgaatgagttactgaagcacgtgaaacaccagaatcattaccacagg
tgccttcttaccgcagcagtctctgcactgcagggccgcagtgtggcagtgcagagacag
gtggcgaaggctgtgcacagtaaccctgctgaccctgctctttggtctttgctatctcga
attgttgctcagtacacccagcggaatgcaaagggtggtgctgtagctggccaagtggct
cacactttggattcgaatcaaggaaagaaggcattactgtatactgctgtgaaccagttg
gcccagggaagcagtccggcagaagatgaaagcaacgctgctctaaagaccattcagaag
gcagccttcctttctccagatgaccctgctgtctgggctgtcctgatggcagcctgccat
gcagataataaactggctttggtcagtaacactcagccaaagagggtagatttatacttg
gcattgcagtctgctgtttctgcttcacttaaggacaaagaaattttgcaaaattataac
cagtcgcttgaaaggtggtctttttcgcaagctgtcactggtctaattgacacaggaaaa
atacctgaagctgaatctctgtgcacaaagaatttaaaaagtaaccctgatcagccagct
atcatcttactgttgagacaagttcagtgtacttcactcctggcgtcacagaagcccctc
ccagatgctgtactggaagaactgcagaaaacagtcctgtccaactcaacctctgtcccg
gcatggcagtggttggcacaggtgtatcagtcccaaggaatgatgggtgctgcggagatg
tgttacagaaagagtctccaagtagcatcccaacagggcagctggagtgggaagctctcc
agtctgttgaagctagcccttcttgcattggaagtgtgcatggctaatgtttcaggtgat
cactggtcatccttggttcaagaagccacaagtgaggccttgaaggtttgctttagtcca
ctggccgtcttcttgcaagcgttgttacagtttaaccgtaagatgggagcaagagagacg
cggcgacttttggagagagtagtgtatcagactggataccccaactcaattgtatcagct
gctcgttggtacctcttaagacacctctatgcaaaagatgaccatgagttaattgatgtg
ttggtgaggaacgctgagactcacggggataaaaggatgttggaactgaatcagaagctg
tcggcgcagtaa
DBGET
integrated database retrieval system
