Micromys minutus (European harvest mouse): 308436613
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Entry
308436613 CDS
T12044
Symbol
SKIC2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
mmiu Micromys minutus (European harvest mouse)
Pathway
mmiu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
308436613 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmiu03019
]
308436613 (SKIC2)
Enzymes [BR:
mmiu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
308436613 (SKIC2)
Messenger RNA biogenesis [BR:
mmiu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
308436613 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
308436613 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
308436613
NCBI-ProteinID:
XP_080793724
LinkDB
All DBs
Position
25:complement(2713314..2723197)
Genome browser
AA seq
1244 aa
AA seq
DB search
MMETERLVLPPPDPLNLPLRALEVGCTGRWELLNVPGPPESTLPHGLPPCAPDLCQEAEQ
LFLSSPAWLPLHGVEHSARKWQRKTDPWSLLAALGAPVPSDLQAQRHPTTGHILGYKEVL
LENTNLSATTSLSLRRPPGPASQSLWGNPTQYPFWPGGMDEPSITDLSTREEAEEEIDFE
KDLLTVPPGFKKGVDFAPKDHPAPVPGLLSLSRLLEPLDLSGGDEGEGEAAGGPRGDPAS
ASSSSTPLVRASSLEDLVLKEASTVVSTLEPPKPPPQEQWAVPVDVTSPVGDFYRLIPQP
AFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIK
ALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFD
EVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKQRQIYVISTVAR
PVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQPTH
QGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLF
LQRCLARLRGSDRQLPQVLHMSELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATE
TFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRV
PEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSKAHE
QALADLTKRLGALEEPDVTGQLADLPEYYSWAEELMETRNMIQQRIMESVNGLKSLSVGR
VVVVKNEEHHNALGVILQVSSNSTSRVFTTLVLCDKPVVSENPRDKGPATPDVPYPEDLV
GFKLFLPEGPCEHTVAKLQPGDVAAISTKVLRVNGEKISEDFSKRQQPKFRKDPPLAAVT
TAVQELLRLAQAYPAGPPTLDPINDLQLKDVAVVEGGLRARKLEELVRGAQCVHSPRFPA
QYMKLRERMQIQKEMERLHFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVAC
AMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGDQLPSSLKQGVERVKAVA
KRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQR
LAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaccgagcgcctagtgctgcctcccccagatcccctgaacttgccccttcga
gctctggaagtggggtgcactggccgttgggagctgctgaacgtgccagggcctccagag
agtactcttccccatggcctccctccatgtgccccagatctatgccaggaagcagagcag
ttgtttctgtcgtctccagcctggcttcctctacacggagtagagcactcagctagaaaa
tggcagaggaagacggatccctggtcgcttctggctgctctgggggctccagtcccatca
gaccttcaggcccagagacacccaaccaccggccatatactgggctataaggaggtcctg
ctggagaacacaaacctgtctgccacaacctccttgtcccttcgccggcctccagggcca
gcctcccagtcgctatggggcaatccaacacagtaccctttctggccaggcgggatggac
gagcccagcataactgatctgagtactcgggaggaagccgaggaggagatagactttgag
aaagatcttctcactgtcccacctggcttcaagaaaggggtggattttgcccccaaagat
cacccagctcctgtgccaggtttgctcagcctcagtcgcctgctggagcctctagatctg
agtggaggagatgagggtgagggagaggcagcaggaggtcccagaggggaccccgcctca
gcctcctcctccagtactcccttggtccgagcaagcagcttggaggatctagtgttgaag
gaagcttccacagttgtatccaccctggagcctcccaaacctccacctcaggaacagtgg
gctgtgcctgtggacgtcacctcccccgtgggtgatttttaccgtctcatccctcagcca
gccttccagtgggcgtttgagccagatgtgtttcagaagcaggccatcctgcacttggag
cagcatgactctgtctttgttgcagctcacacatctgctgggaagacagtggtggccgaa
tatgccattgccctggcccagaagcacatgacccgtaccatctacacttctcctatcaaa
gccctgagcaaccagaagtttcgggacttccgaaacacattcggggacgtggggctcctc
acgggggatgtgcagctgcacccagaggcctcctgcctcatcatgaccacagagatcctt
cgctccatgctctacagtggctcagatgtcatccgagacctggagtgggtcatctttgac
gaagtccactatatcaacgatgctgagcgaggggtcgtgtgggaggaagtgctcatcatg
ctccctgagcacgtctccatcatccttctgagcgccacggtccccaacgccctggagttt
gctgactggattgggcggctgaagcagcggcagatctatgtgatcagcacggttgcccgt
cctgtccccctggagcactatctcttcacaggaaacagccccaagacacagggcgagctc
ttcctgctgctggactcccgaggggccttccacaccaaggggtactacgccgcagtggag
gccaagaaagagaggatgagcaagcacgcccagaccttcggggccaagcagcccacgcac
cagggtgggcctgcacaggaccgtggggtgtacctgtccttgctggcttccctccggacc
cgggcccagttgccagttgtggtgttcaccttctcccgaggccgctgtgatgagcaggct
tccggcctcacctctctagacctcacgacgagctcggagaagagcgagatccacctcttt
ctgcagcgctgcctcgcacggctccgaggctccgaccgacagctgccccaggtcctccac
atgtcagagctccttcgccgaggcctgggtgtgcaccacagtggcattctgcccatcctt
aaggagattgtggagatgcttttcagccggggcctggtcaaggtcttgtttgccactgag
acttttgccatgggggtaaacatgccagcaaggacagtggtgtttgactccatgcgcaaa
catgatggctctaccttccgggacctgctgcctggggagtacgtgcagatggcaggccgg
gcaggccggaggggcctggaccccacaggcaccgtcatccttctctgtaagggccgagtg
cccgagatggcagatctgcaccgcatgatgatggggaaaccgtcccagcttcagtcccag
ttccgcctcacatacaccatgatcctcaacctgctgcgggtggacgccctcagagtggaa
gacatgatgaagaggagcttctcagagttcccatcccgcaaggacagcaaggcccatgag
caggctctggctgacctcaccaagaggctgggggctttggaggagcctgatgtgaccggt
cagttggctgacctgcccgagtattacagttgggcggaggagctgatggagacccggaac
atgatccagcaacgcattatggagtctgtaaatgggctgaaatctctctcagtgggaagg
gtggtcgttgtgaagaatgaggagcatcacaacgcattgggtgtgatcctgcaggtctcc
tcaaactccaccagcagggtatttacaacactggtcttgtgtgataagcctgttgtgtct
gagaacccaagggacaaggggccagccactccagatgtgccctacccagaagaccttgta
ggcttcaagctgttcctgcctgaaggaccctgtgagcacactgtggccaagctccagcca
ggagatgtggctgctatctctaccaaagtgctccgggtgaatggggagaagatctctgaa
gactttagcaaaaggcagcaaccaaaattcaggaaggatcctcccctcgcggctgtgacc
actgctgttcaggagctgctgcgtctggctcaggcctatccagcaggtcccccaaccctt
gaccctatcaacgatctgcaactcaaggatgtggcagtggtagaaggtgggctccgggcc
cggaagctggaggagctggtccgaggggctcagtgtgtgcacagcccccggtttcctgct
cagtacatgaagctgcgggagcggatgcagattcagaaggaaatggagaggctgcacttc
ctcctgtccgaccagtcgctgttgctgctccctgagtaccaccagcgtgtagaggtgctc
cggaccctgggctatgtggatgaagctggcacggtgaagctggcaggccgagtggcctgc
gccatgagcagccatgagctgctccttactgaactcatgtttgacaatgcactgagcgct
ctgcggccagaggaaatcgcagctctgctctctggcctggtgtgtcagagccccggagac
cctggagatcagctcccgagcagcctgaaacagggtgtagaacgcgtgaaagctgtggcc
aagcggattggtgaggttcaggtggcctgtggcctgaaccagacggtggaggagtttgtg
ggagagctgaacttcggtctggtcgaggttgtgtacgagtgggctcggggcatgcccttc
tccgagttggcagggctctcagggacccctgaaggcctggttgtccgctgcatccagcga
ctggctgagatgtgtcgctcacttcgaggagcggcccgtctggtcggagagcctgtgctg
ggtgccaagatggagacagcggccaccttgctccggagggacatcgtcttcgcagccagc
ctctacacccagtaa
DBGET
integrated database retrieval system
