Micromys minutus (European harvest mouse): 308437797
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Entry
308437797 CDS
T12044
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
mmiu Micromys minutus (European harvest mouse)
Pathway
mmiu04151
PI3K-Akt signaling pathway
mmiu04510
Focal adhesion
mmiu04512
ECM-receptor interaction
mmiu04518
Integrin signaling
mmiu04974
Protein digestion and absorption
mmiu05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
mmiu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
308437797 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
308437797 (COL2A1)
04518 Integrin signaling
308437797 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
308437797 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
308437797 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
308437797 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mmiu00536
]
308437797 (COL2A1)
Glycosaminoglycan binding proteins [BR:
mmiu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
308437797 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
308437797
NCBI-ProteinID:
XP_080795098
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Position
27:<22624628..>22652915
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AA seq
1419 aa
AA seq
DB search
MIRLGAPQSLVLLTLLIAAVLQCQGQDARNLGPKGQKGEPGDIRDVVGPRGPPGPQGPAG
EQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGFPGLGGGNFAAQMAGGFD
EKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPA
GKPGDDGEAGKPGKSGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK
GESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFP
GAPGAKGEAGPTGARGPEGAQGPRGEPGNPGSPGPAGASGNPGTDGIPGAKGSAGAPGIA
GAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAPGPAGEE
GKRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLTGPKGANGDP
GRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPK
GANGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPSGPAGERGEQGAPGPSGFQGLP
GPPGPPGEGGKQGDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTD
GPKGAAGPDGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLT
GPIGPPGPAGANGEKGEVGPPGPSGSTGARGAPGERGETGPPGPAGFAGPPGADGQPGAK
GDQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP
GSNGNPGPAGPPGPSGKDGPKGARGDTGPPGRAGDPGLQGPAGAPGEKGEPGDDGPSGSD
GPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLT
GPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALGAPGAPGPPGSPGPAGPTGKQGDR
GEAGAQGPMGPSGPAGARGIAGPQGPRGDKGESGEPGERGLKGHRGFTGLQGLPGPPGPS
GDQGASGPAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPAGPPGNPGPP
GPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEADSTLRQHDVEVDATLKSLNNQIES
IRSPDGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNP
ATVPRKNWWSSKSKEKKHIWFGETMNGGFHFSYGDGNLAPNTANVQMTFLRLLSTEGSQN
ITYHCKNSIAYLDEASGNLKKALLIQGSNDVEMRAEGNSRFTYTALKDGCTKHTGKWGKT
VIEYRSQKTSRLPIVDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgattcgcctcggggctccccagtcgctggtgctgctgacgctgctcatcgccgcggtc
ctacagtgtcagggccaggatgctcgaaatttagggccaaaggggcagaaaggagaacct
ggagacattagagatgtcgtaggacccagaggacctcctggccctcagggacctgccggt
gaacaaggacccagaggtgatcgtggtgacaagggagaaaagggtgcacctggaccccgt
ggcagagatggagagcccggtacccctgggaatcctggtccccctggccctccaggaccc
cctggtttccctggccttggtggaggaaactttgcggcccagatggctggagggtttgac
gagaaggctggcggtgcccagatgggagtcatgcaaggtcccatgggccccatgggacct
cgtggacccccaggccctgccggtgcccccggccctcaaggatttcaaggcaatcctggt
gaacccggcgaacctggcgtctccggtcccatgggtccccgaggtcctccaggtcctgct
ggaaaacctggtgatgatggtgaagctgggaagcccggaaagtctggggaaagaggcctt
cctggtcctcagggtgctcgtggattcccgggaaccccgggtcttcctggtgtcaagggt
cacagaggttacccaggcctcgacggtgctaagggagaagctggtgctccgggtgtgaag
ggcgagagcggttcccctggtgagaacggatccccaggcccaatgggtccccgaggtctg
cctggcgagagaggacggactggccctgctggtgctgctggtgctcggggcaacgacggc
cagccaggccctgctggacctccgggtcctgttggtcctgcaggtggtcctggcttccct
ggtgctcctggtgccaagggtgaagctggtcccacaggtgcccgtggtcctgaaggtgcc
caaggtcctcgtggcgagcctggcaatcctgggtcccctgggcccgcgggtgcttctggt
aaccctgggactgatggtattcccggagccaaaggatctgctggtgctcccggaattgct
ggtgcccctggcttccctgggccccgtggccctcccggtccacaaggtgcaactggtcct
ctgggccccaaaggtcagacgggtgagcctggcatcgctggcttcaaaggtgaacaaggc
cccaagggagagactggacctgctgggccccagggagcccctggccctgctggtgaagaa
ggaaaacgaggtgctcggggagaacctggtggtgctggacctatcggcccccctggagag
agaggtgctcctggcaaccgtggtttcccaggtcaagatggtctggcaggtcccaagggt
gcccctggagagcgagggcctagtggcctgactggtcccaagggagctaatggtgacccg
ggccgtcctggagagcccggtcttcctggagccaggggtctcactggtcgccctggtgat
gctggtcctcaaggcaaagttggtccttctggagcccctggtgaagatggtcgccctggg
cctcctggtcctcagggagctcgtgggcagcctggcgtcatgggtttccctggccctaaa
ggtgccaacggcgaacctggcaaagctggtgagaagggactggctggtgctcctggtctg
agaggtcttcctggcaaagatggtgagacaggagccgctggaccccccggccccagtgga
cctgctggtgaacgaggcgagcagggtgctcctgggccatcagggttccagggacttcct
ggccctcctggtcccccaggtgaaggtggaaagcaaggtgaccagggtattcctggtgaa
gctggagcccctggccttgtgggtccccggggtgagcgaggtttcccaggtgaacgtggc
tctcctggtgctcagggcctccagggtccccgaggcctccctggcactcctggtactgat
ggtcccaaaggtgcagctggtccagatgggccccctggggctcagggccctccaggtcta
cagggaatgcctggtgagaggggagcagccggtattgctggacccaagggtgacagaggc
gatgttggcgagaaaggcccagagggagctcctggaaaggatggtggccgaggtctgact
gggcccatcgggcctccaggcccagcaggtgccaacggagaaaagggagaagtcggacct
cctggcccttcaggaagcacgggagctcgaggtgccccgggtgaacgtggagagactggg
ccacctggacctgctggattcgctggccctcctggtgctgatggccagcctggtgccaag
ggtgatcaaggagaagctggacagaaaggggatgctggtgcccctggcccacaaggcccc
tctggagctcctggcccacagggtcctactggagtgaccggtcctaagggagcccgaggt
gcccaaggtcccccgggagctaccggattccctggagctgctggccgagttggaccccca
ggttctaatggcaaccccggacctgccggtccccctggtccttctggaaaagatggtccc
aaaggtgctcgaggagacactggtccccctggcagagctggtgaccctggacttcaaggt
cctgcaggagctcctggcgagaaaggagaacctggggatgatggtccctctggttctgat
ggccccccaggtccccagggtctggctggtcaaaggggtattgttggtcttcctggtcag
cgcggtgagagaggattccctggtcttcccggcccatcgggtgagcccggcaagcagggc
gcacctggtgcatctggagacagaggtcctcctggtcctgtggggcctcctggcctgaca
gggcctgcaggtgaacctggacgagagggcagccctggtgctgatggaccccctggcaga
gatggtgcagctggagtcaagggtgatcgtggtgagactggtgcgctgggtgctcctgga
gctcctgggcccccgggctctcctggccctgctggcccaactggcaaacaaggagacaga
ggagaggctggtgcacaaggtcctatgggcccctcgggacctgctggagcccgcggaatt
gcaggacctcaaggcccccgaggtgacaaaggagaatctggagaacctggcgagagggga
ctgaagggacaccgaggtttcactggactgcagggtctgcccggccctccgggtccttct
ggagatcagggtgcttctggccctgctggtccttctggccctagaggtccacctggccct
gttggtccctctggcaaagatggctctaatggaatccctggccccattgggcctccaggt
ccccgtgggcgctccggagaaactggccctgccggtcctcctggaaatcctggtccccct
ggccctcctggtcctcctggtcctggcatcgacatgtcagcctttgctggcttaggacag
agagagaagggccctgaccccctgcagtacatgcgggccgatgaggcagacagtaccttg
agacagcacgatgtcgaggtggacgccacgctcaagtcactgaacaaccagatcgagagc
atccgcagccccgacggctcccgcaagaatcctgctcgcacctgccaagacctgaaactc
tgccacccggagtggaagagcggagactactggatcgatcccaaccagggctgcaccttg
gacgccatgaaagttttctgcaacatggagaccggtgagacttgcgtctaccctaaccca
gcgactgtgcctcggaagaactggtggagcagcaagagcaaggagaagaagcacatctgg
tttggcgagaccatgaatggtggcttccacttcagctatggtgacggcaacctggctccc
aacacggctaatgtccagatgacgttcctgcgcctactgtccaccgagggctcccagaac
atcacctaccactgtaagaacagtatcgcctacctggacgaagcgtctggcaacctcaag
aaggccttgctcatccagggctctaacgatgtagagatgagggccgagggcaacagcagg
ttcacatacaccgccctgaaggacggctgcacgaaacacaccggtaagtggggcaagacc
gtcatcgagtaccgatcacagaagacctcacgcctccccattgttgacatcgcacccatg
gacattggagggcctgaacaggaattcggtgtggacatagggcccgtctgtttcttgtaa
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