Methanosarcina mazei S-6: MSMAS_0095
Help
Entry
MSMAS_0095 CDS
T04532
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mmj
Methanosarcina mazei S-6
Pathway
mmj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSMAS_0095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmj03019
]
MSMAS_0095
03400 DNA repair and recombination proteins [BR:
mmj03400
]
MSMAS_0095
Enzymes [BR:
mmj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MSMAS_0095
Messenger RNA biogenesis [BR:
mmj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSMAS_0095
DNA repair and recombination proteins [BR:
mmj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MSMAS_0095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
Helicase_Sgs1
ResIII
Sigma70_r4_2
HTH_7
Motif
Other DBs
NCBI-ProteinID:
AKB63291
UniProt:
A0A0E3LTC7
LinkDB
All DBs
Position
119981..122671
Genome browser
AA seq
896 aa
AA seq
DB search
MGADQGVLEDSKNELEARVLMSSRMHSVLRQYFGYTAFRPLQEEIIRDVLDRKDVFVLMP
TGGGKSICYQLPSLLLDGVTVVVSPLISLMKDQVDGLEANGIAAACMNSTQSPRENRDVK
NAFLENRLKVLYIAPERLMMPGTFAFLKKGKVSLFAIDEAHCISEWGHDFRPEYRKLKLL
RDPKNGFPDVPVIALTATATERVKKDIVSQLGLNIDPEKGPYVASFNRSNLYYEVRPKKD
TFSEITDYLLRHRGEAGIIYCQSRNNVETLTRKLNLAGFRALPYHAGLSDSERSRNQEMF
IRDDVDIIVATIAFGMGINKSNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSR
GDRFKIEYFIAQKTNEKEKDISLVQLRQMVAYCEGNKCRRQTLMEYFGEELSTPCGNCDT
CLRPKNTFDGTEAARKLISCIQDLNQRFGTNYVIDVLTGSKNKKIRQNRHEKLKSHGSGR
EFTKEQWRSLASEILNTGLLEVHGAQYPVLKLNAMSRKILNGLEKVELVCPDGFIPGAEE
SFTLPAPAGKIQEKSENDKQIPAREDSVAPPLKIPKSGTFPKSGTEHDPILFERLKALRK
KIALNKNLPPYIIFSDTSLKEMAAKFPLTSDEFHSITGVGDHKLRKYGDEFLKEIGDYCR
DYGLTPSGKVNLSGDCFTDLEKEKGDLKSPLYETSVSGLEIEAQGNDISSSEAGKEKSLE
TPFSYAPPKKSSETRRSPVKRVKYLDMSIQDWSETDSSKPDSPDSSFLEIGSFEKDTFEI
ENSEINSTDMDIFENSSLEKTYALYEKGLDIGEIAEIEGLSIKNVYRQFEKLVLAGKVRK
IERLVPSERQEQVKSLMEELEIEIDALIRAKMGEGCQEEELNLIRALLMSKILYPI
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgggtgctgatcaaggagtattggaggacagtaaaaatgaactcgaggccagagtgtta
atgtcttctagaatgcattctgttctccgccagtacttcggatatactgctttcagaccc
cttcaggaagaaattatcagagatgttctggaccggaaagacgtgtttgtgctgatgccc
acaggaggaggcaaatccatatgctaccagttgccttccctgcttctggacggagttact
gttgtagtttctcccctgatttcccttatgaaagaccaggtggacgggcttgaagcaaac
gggattgctgcggcctgcatgaacagcacccagagccccagagaaaaccgggatgttaaa
aacgcttttctggaaaacagattgaaggtactctatattgctccagagaggcttatgatg
cccgggactttcgcttttctgaagaaaggcaaggtaagtctttttgcaattgatgaggct
cactgtatttcggaatggggacatgacttccggcccgagtacagaaaattgaaactcttg
agggacccaaagaacggttttcctgatgtgcctgttattgcacttacggctacagctacc
gagagggtcaaaaaagatatagtgtcccagctcgggcttaatatcgatccggaaaaaggt
ccttacgttgccagctttaaccggagcaacctttactacgaggtcaggccaaagaaagac
accttttcagagataaccgactatctactcagacacaggggagaagccggaattatttac
tgccagagccggaacaatgtagaaacccttacaagaaaactgaaccttgccgggttcagg
gctctcccctatcatgccgggctttcggattctgagcgttcccggaaccaagaaatgttc
ataagagacgatgtggacataatagtggctactattgccttcgggatgggtatcaataag
tccaatgtcaggtttgtaattcattacgatcttccgagaaaccttgaaagttattaccag
gaaacggggcgtgggggcagggacggcagcccatgcgagtgtatccttttctttagcaga
ggagaccgctttaaaatagaatacttcatagctcagaaaacaaacgagaaagaaaaggat
atttcccttgtacagttaaggcagatggtagcttattgcgaaggtaataaatgcaggcgg
cagactctaatggaatatttcggtgaagaactttcaacaccatgcggcaattgcgatacc
tgcctcaggcctaaaaatacttttgatggaactgaagctgccagaaaactgatttcctgt
atccaggacttgaaccagcgttttggtacgaattacgttattgatgttctcacgggctca
aaaaataaaaagatcaggcagaaccgccatgaaaagctgaaatcccacggcagcggcagg
gaatttacaaaggagcaatggaggtcgcttgcttccgaaattctgaataccgggcttctg
gaagtccacggagctcaataccctgtcctgaaacttaacgctatgagcaggaaaattttg
aacggtttggaaaaagttgaacttgtctgtcctgacggttttatacccggagctgaagag
agtttcacgcttccagcacctgcaggcaaaattcaggaaaaaagtgagaacgataaacaa
attcccgcccgggaggattcagttgctcctcctcttaaaataccgaagtccggaacattt
ccaaaatctggaacagagcatgaccctattctttttgagagattaaaagccctcagaaag
aagatcgctttaaacaaaaacctccctccttatattatattttctgacacaagcctcaaa
gagatggctgcaaagttccctcttacttctgatgagtttcattcaattacaggagtagga
gaccataagctccggaaatatggggatgaatttcttaaagagatcggtgattactgtaga
gactatggcctgacaccttcagggaaagttaacctttccggagactgctttactgatctc
gaaaaagagaagggagatttaaagagcccattatatgaaacatcagtttcagggctcgaa
attgaagcccagggaaatgatatttcctcttctgaagccggtaaagagaaaagtttagaa
actccattctcctatgcccctcccaaaaaatcttccgaaacacgcagatcaccagtaaaa
agagtaaagtatctggatatgagcattcaggactggtctgaaacagactcttctaaacct
gattctcctgattcaagttttcttgaaataggttcttttgaaaaggatactttcgagatt
gagaactctgaaatcaattctactgacatggatatttttgaaaattcgtctcttgaaaag
acttatgctctttatgaaaaaggtcttgatatcggagaaattgcagaaattgaagggtta
agtataaaaaacgtttacaggcaatttgaaaaattggtgcttgccggtaaggtcagaaaa
attgaaaggcttgtgccttctgaaaggcaggagcaggtcaagtcattaatggaagagctg
gaaattgaaatcgatgccctgataagggcgaaaatgggtgaaggctgccaggaagaggaa
ctgaatctcataagagctcttcttatgtcaaaaattctttatccaatctga
DBGET
integrated database retrieval system
