Methanosarcina mazei S-6: MSMAS_0273
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Entry
MSMAS_0273 CDS
T04532
Name
(GenBank) TATA-box binding protein
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
mmj
Methanosarcina mazei S-6
Pathway
mmj03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mmj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MSMAS_0273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mmj03000
]
MSMAS_0273
03021 Transcription machinery [BR:
mmj03021
]
MSMAS_0273
Transcription factors [BR:
mmj03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
MSMAS_0273
Transcription machinery [BR:
mmj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
MSMAS_0273
RNA polymerase III system
TFIIIB
MSMAS_0273
RNA polymerase I system
SL1/TIF-1B
MSMAS_0273
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
DUF3378
RTT107_BRCT_5
Motif
Other DBs
NCBI-ProteinID:
AKB63469
LinkDB
All DBs
Position
354443..354994
Genome browser
AA seq
183 aa
AA seq
DB search
MSESSIKIENVVASTKLAEEFDLTVIESEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSG
KVVCTGTKNVADVHTVVGNLAKKLNSIGIKTIEDPQITVQNIVASADLHTILNLNAIAIG
LGLENIEYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVAGGKSPEDCERSVEVVRQQLDSM
GLL
NT seq
552 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaatctagtatcaagatcgaaaatgtggttgcatccaccaaactcgctgaagaa
ttcgacttaactgttatcgaatcagagttcgaaggagcagagtacaacaagcagaagttc
cccgggctcgtttacagggtttcagatcctaaagctgcatttctggtctttacttccggc
aaggttgtctgtacagggacgaaaaatgttgccgatgtacacacagttgtaggcaatttg
gcgaaaaagctgaacagtatagggattaagaccatagaggaccctcagattactgtccag
aatattgttgcttccgcagacctgcatactattttgaaccttaatgcaattgcaataggg
cttggacttgaaaacattgaatacgagcctgagcagtttcctggtcttgtatacagaatt
gatgagcccaaagtagttgtgcttatcttcagctccggaaaactggtagttgcaggcggt
aagagccctgaagattgcgagaggagcgtggaagtagtccgccagcagctcgacagtatg
ggtcttttataa
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integrated database retrieval system
