Methanosarcina mazei S-6: MSMAS_1395
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Entry
MSMAS_1395 CDS
T04532
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
mmj
Methanosarcina mazei S-6
Pathway
mmj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mmj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MSMAS_1395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmj03400
]
MSMAS_1395
DNA repair and recombination proteins [BR:
mmj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MSMAS_1395
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MSMAS_1395
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
AAA_29
AAA_21
nSTAND1
nSTAND3
AAA_25
DnaJ_CXXCXGXG
AAA_22
RsgA_GTPase
Viral_helicase1
AAA_33
ATPase
T2SSE
cobW
AAA_23
SLFN-g3_helicase
AAA_18
BCA_ABC_TP_C
SCO2_C
Ncstrn_small
DUF8543
Motif
Other DBs
NCBI-ProteinID:
AKB64591
UniProt:
A0A0E3LU37
LinkDB
All DBs
Position
1710650..1713637
Genome browser
AA seq
995 aa
AA seq
DB search
MKNIIIKGAREHNLKDITVELPRDRLIVITGVSGSGKSTLAFDTIYAEGQRRYVESLSAY
ARQFLGLMNKPDVDSIEGLSPAISIEQKTTSKNPRSTVGTVTEIYDYLRLLFARVGTPYC
PVHGIKIESQSPERIADSLSRECEGMVTILAPIVRQKKGTYQQLFRDLNSEGFTRVRVNG
EIHRTDDEISLDRYKKHDIEAVVDRLDPSEDRSRLVEACENALQKAAGLLIAVDSEGKDH
LYSSNMACPVCGMAFEELQPRMFSFNSPFGACEACNGLGFKMELDPDLIIPDKSLCIADG
AVAVYRNYLDGYRSQHLAAVAKHFGFDVFTPIEALSEKQYNALMYGTDERIHFNMNMKNG
DVQWSHKGTWEGLLPQSERLYNQTKSEYRRKELEKFMQVHPCPKCEGKRLKEKVLAVKIA
DKSIVDITDLSISQSVRFFEDLKLPQKEQEIAKQVLKEIRSRLGFLEHVGLSYLTLSRSA
GSLSGGEAQRIRLATQLGSNLMGVLYVLDEPSIGLHQRDNERLIETLQTLRDLGNTLIVV
EHDEDTIRAADYVLDIGPGAGIHGGYVVAEGTPSEIEKNPESLTGKYLSGEKQIKPPAIR
RQSDSFIRLKGCRENNLKDVDANIPIGLLTVVTGVSGSGKSTLIYDTLYKALTKKINKSS
VTPGEYDELIFDSEIDKVIVIDQSPIGRTPRSNPATYTKVFDAVRQAFAETKEAKIRGYK
NGRFSFNVKGGRCEACQGEGLIKIEMNFLPDVYIECEECKGTRYNRETLEVKYRGKSIAE
VLDMTVEEAAEHFENVPAINGKLNTLVRVGLGYIKLGQSSTTLSGGEAQRIKLTRELSKK
CTGKTIYLLDEPTTGLHFHDVKKLISVLNGLVAKGNTVVVIEHNLDVIKSADHIIDLGPE
GGHAGGEIIAAGTPEEVAMVQESYTGRFLAPRILANANLYLEPGSQPVEAVFEEEEDFGT
DFEELEEESDENLDEEPEEFDRTDDTFEEKILQKV
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatatcataatcaaaggggcacgggaacacaacctgaaagacattaccgtggag
cttccgcgggacaggttaattgtaattaccggcgtgtcagggtcaggaaaatcaaccctt
gcctttgacactatttatgccgaaggtcaacggcgctatgttgagtcgctctctgcttat
gcgcggcagttcctcgggcttatgaacaagccggatgtggacagcattgaagggctgtct
ccggcaatttccatagaacagaaaaccacctctaaaaatcccaggagtacggtggggact
gtaacagaaatttatgactacctcaggctgctttttgcaagggtcgggactccctactgc
cctgttcacggcataaaaatcgagtcccagtctccggaaaggattgctgacagcctcagc
agggaatgtgagggaatggttacaatcctcgcacccatagtccgccagaaaaaagggact
taccagcagcttttcagggacctcaacagcgaagggttcacgagggtaagggtgaacggg
gagatccacaggacagatgacgaaatctcccttgacaggtacaaaaaacacgatattgaa
gctgtggttgaccggcttgacccttccgaagaccggtcaaggcttgtcgaagcctgtgaa
aatgcacttcaaaaagccgccggactcctgattgctgtggattcggaaggaaaagaccat
ctttactcttctaacatggcatgtcctgtctgcgggatggcttttgaggaactccagccc
aggatgttttctttcaacagtcctttcggggcttgcgaagcctgcaatgggctcgggttt
aagatggaacttgaccctgacctcataattccggataaaagcctgtgcattgctgacgga
gcagttgctgtttacaggaactatcttgacggctaccggagccagcatcttgctgctgtt
gcaaaacattttggctttgatgtatttactcctatcgaagctctttccgaaaagcagtac
aacgccctgatgtacggcacggatgagcgcatccactttaacatgaacatgaaaaacggg
gatgtgcagtggtcacataaaggtacctgggaagggcttcttcctcagtctgaaaggctc
tacaaccagactaagtccgagtacaggagaaaagaactcgagaaattcatgcaggtccac
ccctgtccaaaatgtgagggcaagcgcctgaaagaaaaggttcttgcagtcaaaatcgcg
gacaagtcaatagtggatattacagacctgtccatttcccagtccgtccggttttttgaa
gacctgaaactcccacaaaaagaacaggaaatcgcaaagcaggtgcttaaggaaattcgt
tcccgcctgggtttccttgaacacgtagggctcagttatctcaccctttcccgaagtgca
ggctcactctcaggcggagaagcccagaggatcaggctggcaacccagttaggctcaaac
cttatgggcgtgctctacgttcttgacgagccttctatagggctgcaccagagagataat
gaacggcttattgagacccttcagactcttagagatctcgggaatactctcattgtggtg
gagcacgatgaagatactatccgggctgcggattatgtgcttgatattggtcccggagcg
gggatacatggagggtatgtggtagccgaaggaacgccttcggaaattgagaaaaatccg
gaatctctgacaggcaaatacctgtccggagaaaagcagataaagcctcctgctattcgc
cgacagagcgattcctttatccgtctgaaaggctgcagggagaataacctgaaagatgtg
gatgcaaatatccccatagggctccttactgtggtcacaggggtttcaggttcaggaaaa
tccacccttatttacgataccctttacaaagccctcacgaaaaagatcaacaaatcaagc
gtaactcccggggaatatgacgagcttatctttgattccgagattgataaggtaattgtt
atcgaccagagccccataggcaggactccacgctcaaaccctgccacctataccaaggtc
tttgatgctgtcaggcaggcttttgccgaaactaaggaagcaaaaatccggggatacaaa
aacgggcgtttctctttcaacgtaaaaggagggcgctgtgaagcctgccagggagaaggg
ctgattaaaatcgagatgaatttcctgcctgatgtttacatcgaatgtgaagagtgcaag
ggaacgcgctataacagggaaacccttgaagtaaaatacaggggcaagtcaattgccgaa
gttctggacatgactgtggaagaagcagcagagcattttgaaaatgtgccagcgattaac
ggcaagctcaatactctcgtacgtgtaggccttggatatatcaagctcgggcagagttcc
acaaccctttccggaggggaagcccagaggatcaaactcacaagggaactctccaaaaag
tgtaccggaaagacgatatacctccttgacgagcccacgacaggcctgcatttccatgac
gttaaaaagttaatttcagtccttaacgggcttgttgcaaaaggaaacaccgttgttgta
atcgaacacaacctggatgttatcaaatccgcagaccatataatcgaccttggtcccgaa
ggaggacacgcaggtggggaaattattgcagcaggtacacctgaggaggttgccatggtt
caggagagctatacagggagattccttgctcccagaattctggcaaacgcaaacctttat
ttggaaccgggatcacagcctgtagaggctgtttttgaagaagaggaagatttcggaacc
gatttcgaggaattagaggaagaatcggatgaaaacctcgacgaagagccagaggaattt
gacagaacagacgatacatttgaagaaaagattcttcaaaaagtttga
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