Methanosarcina mazei S-6: MSMAS_1612
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Entry
MSMAS_1612 CDS
T04532
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mmj
Methanosarcina mazei S-6
Brite
KEGG Orthology (KO) [BR:
mmj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmj03032
]
MSMAS_1612
03400 DNA repair and recombination proteins [BR:
mmj03400
]
MSMAS_1612
Enzymes [BR:
mmj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MSMAS_1612
DNA replication proteins [BR:
mmj03032
]
Prokaryotic type
DNA Topoisomerases
MSMAS_1612
DNA repair and recombination proteins [BR:
mmj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MSMAS_1612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
HHH_5
Cdd1
DUF4332
DNA_pol_lambd_f
Cas_TM1802
IMS_HHH_1
TfoX_C
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
AKB64808
UniProt:
A0A0E3RG32
LinkDB
All DBs
Position
complement(1995752..1998010)
Genome browser
AA seq
752 aa
AA seq
DB search
MHLIVTEKNIAARRIAAILAPKSPKKERVSGVDVYRYEIGSGENRQETAVVGLSGHIVGI
DFPKEYNNWQKVDARDLIDAEITTTPINRKIVTALKSLGKEADRVTIATDYDREGELIGV
EALNIIKKVNPKIPFDRVRYSAITPKAIEVAFSNPTNVDFNLADAGHSRQVIDLVWGAAL
TRYISLAAGRLGKMFLSVGRVQSPTLSLIVDREKERNIFVPTPYWEIHVELEDAAGETFS
AQHSTRRFLDKEEASKVFRKLGKKAELKEIEKGTKTDQPPTPFNTTGFISAANSIGLSPA
NAMRIAESLYTNGYISYPRTDNTVYPDTLDLKAQIEIFKEGPFKEYANTLLEKPELVPTR
GKKETTDHPPIFPASLAKESDLKEDEWKVYELVVRRFFATFAGPSIWETMRLKLDIEGEE
FRANGARLLEPGWRWYYPYNAPEDRLLPELKEGDLLKVIKKEMLDKETQPPGRYGQGRLI
NIMEELGLGTKATRHEIISKLYSRAYIHGNPVQPTNTSFSVMDTLEKYSPTITKPDMTKL
LEENMDKIAEGKIKEEAVLEESREMLKQVFSELDKNRDNIIESLQAGLREDKIIGDCSLC
GNELMIRRSKRGSRFIGCSNYPNCTFSLPLPKSGQIIVTDKLCEAHGLHHIRIINQGKRA
WDLGCPQCNFIEWQKTQKEEQAQQPKKERPKSIKDLEGVGKATAGKLEEAGITSVEALAE
ADPVELAKTIKTSVKKIKNWQTSCNGGAVEDL
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgcatcttatcgtaacggaaaaaaatatagcggcaaggaggatagctgcgattctggct
cctaaaagtcctaaaaaggaaagagtcagcggagtggacgtataccggtacgagatcggt
tccggcgaaaacagacaggaaactgcagttgtggggctttccggccatattgtcgggata
gacttcccaaaggagtacaacaactggcagaaagtcgatgccagagaccttatagacgcc
gagattacaacaaccccgatcaaccggaagatagtgaccgctttaaagagccttggaaaa
gaagcggatagggtcactattgcaactgactacgaccgcgaaggagaactcataggggta
gaagctctgaatatcataaaaaaggttaacccgaaaattcctttcgacagggtccgttac
agtgcaataactccaaaagcaattgaagtcgcattctcaaatcctacaaatgttgatttt
aaccttgcagatgcaggacattccaggcaggtaattgaccttgtctggggagctgccctt
accagatacatttcccttgcagcaggcaggctcggaaaaatgtttctttccgtgggaagg
gtccagtccccaaccctttctcttattgttgacagggagaaagagagaaatatatttgtc
ccaaccccttactgggaaatccacgtagaactcgaagacgctgcaggagagactttttca
gcccagcattctacccgccgttttctggataaagaggaagcttcaaaggtattcaggaaa
ctgggcaaaaaagcggaattaaaggaaatcgaaaagggaacaaagacagaccagcctccc
acaccttttaatactacgggctttatcagcgcggcaaactcaatcggtctcagccctgca
aacgccatgcgcatagccgaatccctttataccaacggttatatttcataccccaggaca
gacaacacggtttatcccgatactcttgacctgaaggctcaaatagagatattcaaagaa
ggaccttttaaagaatatgcaaatacacttcttgaaaagcccgaacttgttcctacccgt
ggtaaaaaagaaaccacagaccacccgcctatctttcctgcttcccttgcaaaggaatcc
gacctcaaagaagatgagtggaaagtttacgagcttgtagtcaggcgcttttttgcaacc
tttgccggaccgagcatatgggaaaccatgaggcttaaacttgatatcgaaggagaggag
ttcagggcaaacggggcaaggcttcttgaacccggatggcgctggtattatccgtacaat
gctcctgaagacaggctgctcccggaacttaaggaaggtgacttattaaaggtgataaag
aaagagatgctggataaagaaacccagcctccgggacgttacgggcagggaaggcttatc
aatataatggaagagctcgggctcgggacaaaagcaacccgccacgagattataagcaag
ctatattccagggcttatatccacggaaaccctgttcagcctactaatacctctttttcc
gtaatggacactctggagaaatattcgcctactattacaaagccggatatgacaaagctg
cttgaagaaaatatggacaaaatagcagagggtaaaatcaaagaggaagctgtccttgaa
gagtcccgcgagatgctcaagcaggtcttttctgaactcgataaaaacagggataatatc
atagaatctttacaggcaggtctccgggaagataaaatcataggcgattgctctttatgc
ggaaacgaactcatgatccgcaggtcaaaaaggggaagccgtttcataggctgcagcaat
taccctaactgtactttctccctgcccctgccgaaaagcggacagatcatagtgaccgat
aagctctgcgaagctcacggcctgcaccatatccgcataatcaaccagggaaaaagagca
tgggaccttggatgtccccagtgcaatttcatagaatggcagaagacccagaaggaagag
caggcacagcagccgaaaaaagaaaggcccaaatccattaaagacctcgaaggcgtggga
aaagccaccgcaggaaaactggaagaagccggtatcacaagtgttgaagccctggcagaa
gcagaccctgtggaacttgcaaaaaccataaagacaagtgtaaagaaaatcaaaaactgg
cagacctcatgcaatggcggcgcagttgaggatttgtaa
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