KEGG   Methanosarcina mazei S-6: MSMAS_1993
Entry
MSMAS_1993        CDS       T04532                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mmj  Methanosarcina mazei S-6
Pathway
mmj03030  DNA replication
mmj03410  Base excision repair
mmj03420  Nucleotide excision repair
mmj03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mmj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MSMAS_1993
   03410 Base excision repair
    MSMAS_1993
   03420 Nucleotide excision repair
    MSMAS_1993
   03430 Mismatch repair
    MSMAS_1993
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mmj03032]
    MSMAS_1993
   03400 DNA repair and recombination proteins [BR:mmj03400]
    MSMAS_1993
Enzymes [BR:mmj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MSMAS_1993
    6.5.1.6  DNA ligase (ATP or NAD+)
     MSMAS_1993
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MSMAS_1993
DNA replication proteins [BR:mmj03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    MSMAS_1993
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     MSMAS_1993
DNA repair and recombination proteins [BR:mmj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MSMAS_1993
   NER (nucleotide excision repair)
    Other NER factors
     MSMAS_1993
   MMR (mismatch excision repair)
    Other MMR factors
     MSMAS_1993
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Matrix_Filo
Other DBs
NCBI-ProteinID: AKB65189
UniProt: A0A0E3RGW5
LinkDB
Position
complement(2502169..2503875)
AA seq 568 aa
MTSFREFAETCQAIEKISSTIETTNKVADLLKKVDVEELPVATHFIMSEVFPAWSGEQLG
IGTSLLYVSLSKASGMSIHSIESLVRTTGDIGDTALLILKEKRKNQVTFSSFFEEKPELS
ITEVYRRFKIASEASGKGSQDIKVKNLQFLFTSSSPREAKYISRLALEELRIGVGEGVVR
DAIAKAFSVPAEIVEHSFMVTNDLGIVAAAAKKGGVEALERLGIEINRPIKMMLSQISPD
IDADIRAMKEVAIEWKFDGARVQIHKDGNSVTLFSRKLENVTSSLPDLVEIVRKHVKAES
AILDGEAVAVDENGVPRAFQEILKRFRRKYDVREKALGIPIQLNFFDIMYINGKTLIDLP
LLERRKALESCVESSVEDSKSISVAEQVITGDLELVEKIYREALKAGHEGVMVKNPNSVY
SPGKRGKNWLKKKPLMDTLDLVIVGAEWGFGRRANLIGSYTVACYDPDTTRFLQVGKVGT
GLTDDQLKELTEILSGLMEGGEAGGVFAIRPKVVLEIAFEEIQKSPNYDSGFALRFPRFI
RIRDDKDPEEADTIQRIGRVYSQQLKRL
NT seq 1707 nt   +upstreamnt  +downstreamnt
atgacaagtttcagggaatttgcagaaacgtgccaggcaattgaaaaaatatcaagcact
atagagaccacaaataaggttgccgaccttctcaaaaaggttgatgttgaagagcttcct
gttgccactcattttattatgagtgaggtttttcctgcctggagtggggaacagctcggg
attggcacaagcctgctttacgtttctctttccaaagcctcaggcatgtccatacacagt
atagaatctcttgtccggacgaccggagatataggggatacagcactccttatccttaaa
gaaaaaagaaaaaatcaggtgacattctcttctttctttgaggaaaagccagagctatca
ataacagaggtttacaggcgtttcaagatcgcatcagaagcttctggaaaaggttcacag
gatattaaggtcaaaaacctccagtttctgttcacttcatcaagtcctagggaagcaaaa
tacatctcaaggcttgcgcttgaagaactcaggataggcgtgggagaaggagttgtcagg
gacgctattgcaaaagctttttctgttcctgcagagattgtggaacattccttcatggtt
acaaatgacctcggaatagtggctgcagcggctaaaaaaggaggggttgaagctctcgag
agactcgggatagaaattaaccgccctatcaagatgatgctttctcagatcagccctgac
atagatgctgatataagagccatgaaggaggttgcaattgaatggaaatttgatggggcc
agggtccagatccacaaggacggaaattccgtaactcttttttcgcgtaaacttgaaaat
gttaccagttccctccctgacctcgttgaaatagtccgaaaacatgtaaaagctgagtca
gcgatccttgacggagaagccgtagctgtggacgaaaatggggttccaagggcttttcag
gaaattctcaagcgtttcaggcgaaagtacgatgtcagggaaaaggcactcggaattcct
atccagctcaacttttttgacattatgtacatcaacggcaaaactttgatagatctcccg
cttctcgagaggaggaaagctcttgagtcctgtgttgagagttctgtcgaggactcaaag
tccatttccgtggctgagcaggtcataaccggagaccttgagcttgtggagaagatctac
agggaagccttaaaagccgggcatgaaggagttatggttaaaaacccgaattccgtttat
tctcctggaaaacgcggaaaaaactggctcaagaaaaaacctctcatggacactcttgac
cttgtaattgtcggagctgaatggggtttcgggcgcagggcaaacctgatcggctcttat
accgttgcctgttacgaccccgatactactcgcttcctgcaggtaggcaaggtcggcacg
gggcttacggacgatcagctaaaagagcttacggaaatactctcagggctaatggaaggc
ggagaagccggaggagtatttgctatcaggccaaaggttgtccttgaaatcgcttttgag
gaaatccagaaaagccccaactacgactcgggttttgcacttcgttttccccgtttcatc
cgcatccgtgacgataaagacccggaagaagcggatactatccagcggatagggcgcgta
tacagtcagcagctgaaaagactgtaa

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