Methanosarcina mazei S-6: MSMAS_2086
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Entry
MSMAS_2086 CDS
T04532
Name
(GenBank) putative exosome complex RNA-binding protein 1
KO
K03679
exosome complex component RRP4
Organism
mmj
Methanosarcina mazei S-6
Pathway
mmj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSMAS_2086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmj03019
]
MSMAS_2086
Messenger RNA biogenesis [BR:
mmj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSMAS_2086
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MSMAS_2086
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
ECR1_N
KH_1
S1_RRP4
S1
RRP40_S1
KH_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AKB65282
UniProt:
A0A0E3RM00
LinkDB
All DBs
Position
complement(2620011..2620793)
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AA seq
260 aa
AA seq
DB search
MDKKIVIPGDLLSDDVKKSGYGTYVKNDKIYSSLCGIESLKEDKVGVIPLAGAYIPSVND
VVIGVVIVVTPSNWILDIAAPYDGLLHVSEYPRRVESREMPEILDVGDSVILRVRDVDSS
MKIELALRDPNLHKLRTGQIVEVEPVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWI
DGKDEDIELLSKALRKIEAEAQRSGLTDRIYNFLKNERMKEKESKPVEFLKNEKTDVSVA
KEDHSEDIYRKIDVLLDPKN
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaaaatagtgatccctggtgacctgttatccgatgatgtaaaaaaatccgga
tacgggacgtatgtcaagaacgacaaaatctattcttcgctttgcggcattgaaagcctc
aaagaggataaagttggagtgatcccacttgcgggagcgtatatcccctcggtgaacgat
gtggtgataggggtcgttattgtggttactccatccaactggatactggatattgcagct
ccttatgacggtttgcttcatgtgtccgagtatccgagacgagtcgaatcccgggaaatg
cctgaaattctggacgtaggcgactctgttattctcagggtgagagatgtggacagctcc
atgaaaatcgagcttgccctgagagacccgaaccttcataaacttaggacaggccagatt
gttgaggttgagcctgtgaaagttccccgtgtaataggacacggcggttccatgatctca
atgctgaagaaagagacaaactgcagcattttcgtaggtcagaacggcaggatatggatt
gatgggaaggacgaggatatagagcttttgagtaaggctctccggaaaatcgaagctgaa
gcccagcgttccgggttgacagaccggatctacaattttttgaaaaatgaacggatgaaa
gagaaagagtccaagcccgttgaatttttaaaaaatgaaaagacggatgtgagtgtggca
aaggaagatcattccgaggatatataccggaagatcgatgtactgctggaccccaagaat
tga
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