Methanosarcina mazei S-6: MSMAS_2148
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Entry
MSMAS_2148 CDS
T04532
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mmj
Methanosarcina mazei S-6
Pathway
mmj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSMAS_2148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmj03019
]
MSMAS_2148
03009 Ribosome biogenesis [BR:
mmj03009
]
MSMAS_2148
Enzymes [BR:
mmj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MSMAS_2148
Messenger RNA biogenesis [BR:
mmj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSMAS_2148
Ribosome biogenesis [BR:
mmj03009
]
Prokaryotic type
rRNA helicases
MSMAS_2148
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
AAA_19
Utp25_C
Flavi_DEAD
V-ATPase_H_C
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKB65344
UniProt:
A0A0E3RM43
LinkDB
All DBs
Position
complement(2700202..2701371)
Genome browser
AA seq
389 aa
AA seq
DB search
MKSIDEHGFESPTAIQEKSIPLILAGEDVIGGAATGSGKTLSFASGILQNSEKGKGIQAL
ILTPTRELAEQVANSLRKFSKYDPLNIASIYGGVGINTQIKELKNAEVVVGTPGRLLDHI
SRNTIKLNNVKTLVLDEADHMFDMGFKVDVEKIIKECPQNRQTLLFSATITKDIVQLSRK
YMKNPVRVSTESYIDPQKLNQVVYKVQDDMKLSLLVYLLQNEKSNLGMVFCNTKRNTDKV
AKNLRKSSINAVAIHGGLTQNERTRIMEKFHSGNIGVLVCTDVAGRGLDIQGVSHVYNYD
IPRESKQYIHRIGRTARAGTEGKAINILSKNDHANFMSVLKDNDVDIKEQALPALKKIVI
ERPEIRLPKPVNRMDNPSRKRHKPRHKNY
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatcaatagatgaacatggctttgaaagccctacagcaatacaggaaaaatcaatt
cccctaatacttgctggggaagatgttataggcggagccgcaacaggttccggaaaaaca
ctctcatttgcttccggcatattacaaaattccgaaaaaggaaaaggaattcaggctttg
atcctgacccctacaagagaactggcggagcaggtagcaaattctttaaggaaattctca
aaatacgacccgttaaatatcgcatctatctatggcggtgtagggatcaatacacaaatt
aaagaattaaaaaatgccgaggttgttgtgggaacacccggtaggctactcgatcatatc
agcagaaataccatcaaactcaataatgtgaaaacccttgtccttgatgaggcagaccat
atgtttgatatgggattcaaagtggatgtagaaaaaattatcaaggaatgtcctcaaaac
aggcagacccttttgttctctgcgaccattacaaaagatattgtccagctttcccgcaag
tacatgaaaaatccggttcgagtatcaacagagtcttatatcgacccgcaaaaattgaat
caggtcgtttataaagtacaggatgacatgaaattatctctgctcgtgtaccttctacaa
aatgagaagtcaaacctcgggatggttttctgcaacacaaaaagaaacactgacaaagtc
gcaaaaaacctgagaaaatcaagtatcaatgccgtggcaattcatggcggactgacacag
aacgaacgaactcgcataatggaaaaatttcattccgggaacataggtgtccttgtatgc
acagatgtagccggaagaggacttgatatacagggtgtttcccatgtttacaattatgat
attcccagggagagtaaacagtatattcacaggattggaagaaccgcacgagcaggaaca
gaaggaaaagcgataaatatcctttccaaaaatgaccacgctaatttcatgagtgtgctg
aaagacaatgatgtggatattaaggaacaggcactacctgctctgaagaagattgtaatt
gaaagaccggaaataaggttgccaaagccggtaaataggatggacaacccctccagaaaa
cgtcataaacccaggcacaaaaactattaa
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